Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07871 ATGGCTGAGGATAAGGAGATGTCTACTTCTGTTATCAATGGGAATGATTCTCTAACTGGTCAAATAATATCTACAACAATTGGCGGTAAAAATGGGGAACCAAAACAGACTATTAGTTACATGGCAGAGCGTGTCGTCGGAACTGGATCATTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACCGGAGAGGCAGTGGCCATTAAGAAGGTTTTACAAGACCGAAGATATAAGAACCGTGAACTACAGTTGATGCGTGTGATGGATCATCCTAATGTGGTCACTCTGAAGCATTGTTTCTTTTCAACTACAAGTACAGATGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCAGAGTCCATGTATCGGGTCTTAAAGCATTATAACAACGCTAATCAAAGAATACCAATCATCTATGTAAAACTTTATATGTACCAGATCTTTAGGGGGTTGGCTTATATCCACACTGTTCCTGGAGTTTGCCACAGGGATTTGAAGCCTCAAAATATACTGGTTGATCCCCTTTCACATCAAGTTAAGTTATGTGATTTCGGAAGTGCAAAAATGCTGGTCAAGGGCGAAGCTAATATATCGTACATATGTTCACGATTCTACCGAGCTCCAGAGCTCATATTTGGTGCGACAGAGTATACTACTTCAATTGACATTTGGTCAGGTGGCTGTGTCCTAGCTGAACTGCTTTTGGGCCAGCCATTATTCCCTGGTGAAAATGCGGTGGACCAGCTCGTACATATTATAAAGGTGCTTGGAACACCCACCCGGGAGGAAGTTCGATGCATGAATCCCAATTACAATGACTTTAGGTTTCCACAAATAAAAGCACACCCATGGCACAAGATCTTCCACAAAAAGATGCCCCCAGAAGCTATCGATCTTGCTTCTCGGCTTTTGCAGTACTCTCCAAGTCTTCGTTGCACTGCGCTTGAAGCTTGTGCACATCCTTTCTTCGATGATCTTCGAGAGCCCAATGCCCGCCTGCCTAATGGTCGCCCATTTCCTCCTCTTTTCAACTTCAAACAGGAATTATCAGGAGCATCACCCGAGCTTGTCAATAAGTTGATACCCGACCACATAAAGCGGCAAATAGGTCTACAATTTGTTCAATCAACCGGATCATGA 1143 0.4278 MAEDKEMSTSVINGNDSLTGQIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVMDHPNVVTLKHCFFSTTSTDELFLNLVMEYVPESMYRVLKHYNNANQRIPIIYVKLYMYQIFRGLAYIHTVPGVCHRDLKPQNILVDPLSHQVKLCDFGSAKMLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSGGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDDLREPNARLPNGRPFPPLFNFKQELSGASPELVNKLIPDHIKRQIGLQFVQSTGS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07871 380 Pfam Protein kinase domain 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07871 380 CDD STKc_GSK3 35 327 IPR039192 -
Vivi1g07871 380 Gene3D Phosphorylase Kinase; domain 1 25 119 - -
Vivi1g07871 380 FunFam Shaggy-related protein kinase kappa 120 367 - -
Vivi1g07871 380 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 5 368 - -
Vivi1g07871 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Vivi1g07871 380 SMART serkin_6 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07871 380 FunFam Glycogen synthase kinase-3 beta 24 119 - -
Vivi1g07871 380 SUPERFAMILY Protein kinase-like (PK-like) 39 349 IPR011009 -
Vivi1g07871 380 ProSiteProfiles Protein kinase domain profile. 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07871 380 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Vivi1g07871 380 Gene3D Transferase(Phosphotransferase) domain 1 120 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07871 Vivi-Chr1 216002989 216006724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07871 44 362 MAP Kinase Gene Family AT3G59790 36.310 7.64e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vivi1g07871 Pkinase 1.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07871 K14502 - gmx:100779909 749.969