Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07866 ATGGCCAAACTATGTTCTCTTCTCTTTTTTCTCTCACTCTCACTAAATTTCCACTTCTTCATTTCTTCAGCTAAGACTAGAAAAAACATCACCACTGATGAATCATCACTTCTTGCATTCAAATCATCCATTACTTTAGACCCTAATAATCCTATGGTTCATAACTGGTCAACATCCTCTTCTTTATGCACTTGGGTTGGTGTCATATGTGATGAACACCATGGTAGAGTCCATACTTTGAATCTTAGTAAGATGAGACTTAAAGGGACTATTTCACCACAACTTGGAAACCTCTCGTTCCTTGTTAACCTTAATCTTCAAGACAATGGTTTCACTGGTGAATTGCCACAATCGTTGTTTCGGTTGCACCGGTTGAAGTTTCTTGATCTGAGTTATAATTTCATCCAAGGCAATCTTCCATCAAATATTTGCAAAAGGCTTCTAAAAGTTACAATGCTTGATCTTTCTCATAATAAATTTTCCGGTGACATGCCTACTGTTTGGCATCAATGTGAAAATTTGGAAAGTTTATCATTATCCTTCAATGGTTTCAACAAAGGCCCAATGCCACAAGACTTGGGAAACTTGAGCAAGCTTCATTACTTAGACCTTAGCAGCAACAACTTGGAGGGCAATCTTCCTTCAAACATTTGCAAAAGGCTTCTAAAAGTTATAGTGCTTGATCTTTCTGATAATGAATTTTCTGGTGATATGCCTACTGTTTGGCATCAATGTGAAAATTTGGAAAGTTTATCATTATCCTTCAATGGTTTCAACAAAGGCCCAATTCCACAAGACATGGGAAACTTGAGCAAGCTTCAGTATTTAGATCTTAGCAGCAACAACTTGGAGGGTTCAATACCAGAGGAGATTGGCCATCTTGATAAACTCAATAACCTAAAATTGACAAACAATGGCTTGACTGGACCTATTGCTTTGAAACTCTTCAACATTTCATCATTGAGGTACTTGTATCTTGGAAACAATTCTCTCTCAGGCGTTCTTCCGTCGGACATGGGCCGTGGCTTACCGAATTTGGAAGATCTACAAATGTCTGGAAACATGTTTGCTGGAAACCTTCCACATGGTTTAGCCAATGCTTCTAAGCTCACTGAAATAGACTTTAGGAAAAATGAATTCAGTGGAATGATACCAAATGTCTTTGGTGGTTTAAAACTCCTTGAATGTCTCCACATAGATGACAATCATAATTTGAAACTAGATGATTCCTTTGGTTTCAACTTCCTCACTTCACTCACAGATTGTAGACATTTGAAATATTTCTCTGCACAAAGAACTAGATTTTCCAAACTCCCCAAGTCAATTGGAAACTTAACTGTGCAATATTTTTGGGCAGATTCTTCGAGAATCGGTGGTAATATTCCATTGGAAATCGGAAATATGAGCAACCTGATTCGGTTATCTCTTACGATGAATGATTTCAATGGACCGATTCCGCATACAATTAGAGGGTTACATAACCTTCAGTCTTTGAATCTCGACAATAATGGACTACAAGGATCCATTGGTGATGAGGTTTGTGAACTTAGGAGTTTGAATACCTTTCATCTATCAAACAATAAGCTTTCTGGAGTGTTGCCTTCATGCTTGGGAAATATGACTTCTCTTAGATATATTCACATAGCATCTAATAGCTTGATCTCGAAGATACCTTCCTCTTTTTGGAGTCTCACAGATCTCTTGGAGGTAGACTTATCCTCCAATGCTTTCGATGGAAGTCTTCCACTGGAAATCGGTAAATGGAGAGCAATTACACTATTAGATTTGTCGGGAAATCAAATTTCAAGCAACATTCCTGATATCATAGGTTCATTACAAAGTTTGCAGATTCTCTCCCTGGCAAATAACAAGTTGTATGGAACGATTCCCACATCAGTTGGTGGAATGTTTAGTTTGAAATTCTTGGATTTGTCGCGAAATCTTCTTACTGGTGTGATTCCAAAATCGTTAGAGTCACTTTCCCGTCTTAAAAGTATCAACTTTTCATACAATATGTTACAAGGAGAGATTCCTGATGACGGACAGTTCAAAAATTTCACAGCTCAATCTTTCATGCATAATGAAGGGCTTTGCGGTAACCCTCGCCTACAAGTACGTTCATGTGATAAACATGTTAGGAGAAGGTCGATCGCGAAGATGTTATTAATCAAATGCATGTTGCCTATAATTGTGTCTGCAATTTTGGTTGCTGGATGTATAATACTTGTACTACGTAAAAGGAAAAATGTTGAAAATCGGCTTGGAAAAGATTTATCGACTATAGGTGCTCATAGAAGGTTTTCCTATTACGAACTTGTGCAAGCAACTAACGGATTCAGCGAAAGTAACTTACTTGGAAAAGGAAGCTTTGGATCTGTGTATCAAGGGATGCTTTCTAGTGGGGAGATAGTTGCAGTTAAAGTTATTGATTTAAACTTTGAAGCAACATCAAAGAGTTTTGATGTAGAATGCAATGCAATGCGCAATCTACGACATCGGAATCTTGTTGAGATTATTAGTAGTTGTTCGAATGTTAATTTCAAATCCTTGGTGATGAAGTTTATGCCAAACGGAAGCGTGGAAAAATGGTTATACTCATATAACTATTGTTTAGATTTCTTGCAAAGGTTGAACATAATGATCGATGTTGCTTCTGCACTGGAGTATCTTCATCACGGTTCTTCAATACCAGTGGTTCATTGTGATCTGAAACCTAGTAATGTTTTACTAGACAGACACATGGTTGCACATGTTAGCGATTTCGGCATTGCCAAGCTCTTGGATGATGGTCAATCCGAAATTCATACCGAGACTTTAGCTACTCTAGGCTATGTTGCACCAGAGTATGGTTCTAAGGGTGTTGTTTCTGTTAAAGGGGATGTATACAGCTTTGGAATTATGCTTATGGAGATGTTTACAAGAAAGAGACCAACAGATGAAATGTTTACAGAAGAATTAACTTTGAAAACATGGATCAGTGGATCAATGCCAAATTCAGTTATGGAAGTTGTGGATTCAAATTTGGTACAGCAACATGAAAAAACAATTCATGACATTGTGTTTCATATATCATCTATTTTCGCTTTGAGCTTGAGTTGTTGCGCAGATTCACCCGAGGAGCGAAATAACATGACAGATATCACTGCATCATTGATCAAAATCAAGACCTTATTCCTCCAAGAAAAAGGAATTGAAGATGTGTAA 3204 0.3755 MAKLCSLLFFLSLSLNFHFFISSAKTRKNITTDESSLLAFKSSITLDPNNPMVHNWSTSSSLCTWVGVICDEHHGRVHTLNLSKMRLKGTISPQLGNLSFLVNLNLQDNGFTGELPQSLFRLHRLKFLDLSYNFIQGNLPSNICKRLLKVTMLDLSHNKFSGDMPTVWHQCENLESLSLSFNGFNKGPMPQDLGNLSKLHYLDLSSNNLEGNLPSNICKRLLKVIVLDLSDNEFSGDMPTVWHQCENLESLSLSFNGFNKGPIPQDMGNLSKLQYLDLSSNNLEGSIPEEIGHLDKLNNLKLTNNGLTGPIALKLFNISSLRYLYLGNNSLSGVLPSDMGRGLPNLEDLQMSGNMFAGNLPHGLANASKLTEIDFRKNEFSGMIPNVFGGLKLLECLHIDDNHNLKLDDSFGFNFLTSLTDCRHLKYFSAQRTRFSKLPKSIGNLTVQYFWADSSRIGGNIPLEIGNMSNLIRLSLTMNDFNGPIPHTIRGLHNLQSLNLDNNGLQGSIGDEVCELRSLNTFHLSNNKLSGVLPSCLGNMTSLRYIHIASNSLISKIPSSFWSLTDLLEVDLSSNAFDGSLPLEIGKWRAITLLDLSGNQISSNIPDIIGSLQSLQILSLANNKLYGTIPTSVGGMFSLKFLDLSRNLLTGVIPKSLESLSRLKSINFSYNMLQGEIPDDGQFKNFTAQSFMHNEGLCGNPRLQVRSCDKHVRRRSIAKMLLIKCMLPIIVSAILVAGCIILVLRKRKNVENRLGKDLSTIGAHRRFSYYELVQATNGFSESNLLGKGSFGSVYQGMLSSGEIVAVKVIDLNFEATSKSFDVECNAMRNLRHRNLVEIISSCSNVNFKSLVMKFMPNGSVEKWLYSYNYCLDFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDRHMVAHVSDFGIAKLLDDGQSEIHTETLATLGYVAPEYGSKGVVSVKGDVYSFGIMLMEMFTRKRPTDEMFTEELTLKTWISGSMPNSVMEVVDSNLVQQHEKTIHDIVFHISSIFALSLSCCADSPEERNNMTDITASLIKIKTLFLQEKGIEDV 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07866 1067 SMART LRR_sd22_2 221 250 - -
Vivi1g07866 1067 SMART LRR_sd22_2 492 513 - -
Vivi1g07866 1067 SMART LRR_sd22_2 196 219 - -
Vivi1g07866 1067 SMART LRR_sd22_2 270 293 - -
Vivi1g07866 1067 SMART LRR_sd22_2 147 176 - -
Vivi1g07866 1067 SMART LRR_sd22_2 122 145 - -
Vivi1g07866 1067 SMART LRR_sd22_2 636 662 - -
Vivi1g07866 1067 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Vivi1g07866 1067 SUPERFAMILY L domain-like 451 701 - -
Vivi1g07866 1067 FunFam Leucine-rich repeat receptor-like protein kinase 30 189 - -
Vivi1g07866 1067 Gene3D Ribonuclease Inhibitor 409 715 IPR032675 -
Vivi1g07866 1067 SMART serkin_6 779 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07866 1067 Pfam Protein kinase domain 780 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07866 1067 Pfam Leucine rich repeat 591 649 IPR001611 GO:0005515
Vivi1g07866 1067 Pfam Leucine rich repeat 517 576 IPR001611 GO:0005515
Vivi1g07866 1067 Pfam Leucine rich repeat 198 257 IPR001611 GO:0005515
Vivi1g07866 1067 Pfam Leucine Rich Repeat 272 294 IPR001611 GO:0005515
Vivi1g07866 1067 ProSiteProfiles Protein kinase domain profile. 779 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07866 1067 PRINTS Leucine-rich repeat signature 199 212 - -
Vivi1g07866 1067 PRINTS Leucine-rich repeat signature 270 283 - -
Vivi1g07866 1067 FunFam Serine-threonine protein kinase plant-type 759 854 - -
Vivi1g07866 1067 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 307 1047 - -
Vivi1g07866 1067 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 418 712 - -
Vivi1g07866 1067 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 855 1063 - -
Vivi1g07866 1067 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 218 407 - -
Vivi1g07866 1067 Gene3D Ribonuclease Inhibitor 32 145 IPR032675 -
Vivi1g07866 1067 Gene3D Ribonuclease Inhibitor 146 221 IPR032675 -
Vivi1g07866 1067 ProSiteProfiles Leucine-rich repeat profile. 272 294 IPR001611 GO:0005515
Vivi1g07866 1067 ProSitePatterns Protein kinases ATP-binding region signature. 785 807 IPR017441 GO:0005524
Vivi1g07866 1067 SUPERFAMILY Protein kinase-like (PK-like) 759 1051 IPR011009 -
Vivi1g07866 1067 ProSitePatterns Serine/Threonine protein kinases active-site signature. 898 910 IPR008271 GO:0004672|GO:0006468
Vivi1g07866 1067 SUPERFAMILY RNI-like 80 435 - -
Vivi1g07866 1067 Gene3D Ribonuclease Inhibitor 341 408 IPR032675 -
Vivi1g07866 1067 Gene3D Ribonuclease Inhibitor 222 340 IPR032675 -
Vivi1g07866 1067 SMART LRR_typ_2 660 685 IPR003591 -
Vivi1g07866 1067 SMART LRR_typ_2 318 342 IPR003591 -
Vivi1g07866 1067 SMART LRR_typ_2 492 514 IPR003591 -
Vivi1g07866 1067 SMART LRR_typ_2 343 367 IPR003591 -
Vivi1g07866 1067 SMART LRR_typ_2 540 563 IPR003591 -
Vivi1g07866 1067 SMART LRR_typ_2 636 659 IPR003591 -
Vivi1g07866 1067 SMART LRR_typ_2 122 146 IPR003591 -
Vivi1g07866 1067 SMART LRR_typ_2 516 539 IPR003591 -
Vivi1g07866 1067 SMART LRR_typ_2 564 588 IPR003591 -
Vivi1g07866 1067 SMART LRR_typ_2 270 294 IPR003591 -
Vivi1g07866 1067 SMART LRR_typ_2 612 635 IPR003591 -
Vivi1g07866 1067 SMART LRR_typ_2 196 220 IPR003591 -
Vivi1g07866 1067 SMART LRR_typ_2 147 170 IPR003591 -
Vivi1g07866 1067 Gene3D Transferase(Phosphotransferase) domain 1 855 1063 - -
Vivi1g07866 1067 Gene3D Phosphorylase Kinase; domain 1 761 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07866 Vivi-Chr1 215751566 215767999 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07866 32 629 Receptor kinase-like Gene Family AT3G47570 34.365 1.15e-77 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vivi1g07866 Pkinase 6.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07866 - K13420 vvo:131644871 2071.59