Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07864 ATGGGTTTAGATGAGAGAAAAGACTGTGTTAGGGTATTGGATTCGGTTCATGAAGTGATTGGAACTTCAAGAGAAGTAGGTATGAATTCAGGATCCAGTAAGAAGGAGGCTGATGAGGAGGTTAAGGTTAAGGAAAAGTGTGATGAAGAAAATATTCGCGACGAATTGCGAGAGGTTGATCAAGAAACTAGTTACAATAATTCAAGCAATTTGGTTAATCAGGAAGTGGTTGAGACAGTGGTTGTTGTGAAAGAGTCTGTTCATGTTCAGCCTGTTCAGACTGAGTGTGTTAATGGAGAGGATAGGAAATTGGAAGCAAAAGGTGATGAATCAGGGCTTAGTTTGGTTTCCAAGAAATCGCCGAAAGGGGTGTCTGGAATCGATAAAGATTCGTGCGTGATTGATATGAAGTGCAGTAGTCACAAAGGGTTTTCTGAGAATTCACAAGGTGAGAGAATTTGTAGGATTTGTCATCTGGCTTTTGGACCGGCGTCAGATGCAGCAATTGTCGAAAATGTGAGTGCTACAAATGGAGATTTTATTCAACTTGGTTGCGCGTGTAAAGACGAGCTCGGCATTGCTCATGTTTATTGTGCTGAAGTTTGGTTCAAGCTCAAGGGAAACAGATTATGTGAAATATGTGGTGAGACTGCGAAAAATGTTTCTGGTGTTACTAATAACGGAGTTATGGAAGAGTGGAATGATAGAAGATTCATGGACAACGGCGGTAACTCATCGCGCAGGTTTGGTGGATGCTGGCGAGCACAGCCGTTTTGTAATTTCTTGATGGCATGTCTGGTAATAGCATTCATTATGCCGTGGTTTTTTCATGTAAACATGTTCTAG 846 0.4149 MGLDERKDCVRVLDSVHEVIGTSREVGMNSGSSKKEADEEVKVKEKCDEENIRDELREVDQETSYNNSSNLVNQEVVETVVVVKESVHVQPVQTECVNGEDRKLEAKGDESGLSLVSKKSPKGVSGIDKDSCVIDMKCSSHKGFSENSQGERICRICHLAFGPASDAAIVENVSATNGDFIQLGCACKDELGIAHVYCAEVWFKLKGNRLCEICGETAKNVSGVTNNGVMEEWNDRRFMDNGGNSSRRFGGCWRAQPFCNFLMACLVIAFIMPWFFHVNMF 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07864 281 MobiDBLite consensus disorder prediction 31 46 - -
Vivi1g07864 281 Pfam RING-variant domain 154 214 IPR011016 GO:0008270
Vivi1g07864 281 SUPERFAMILY RING/U-box 149 217 - -
Vivi1g07864 281 SMART ringv_2 153 215 IPR011016 GO:0008270
Vivi1g07864 281 ProSiteProfiles Zinc finger RING-CH-type profile. 146 221 IPR011016 GO:0008270
Vivi1g07864 281 MobiDBLite consensus disorder prediction 23 46 - -
Vivi1g07864 281 PANTHER ZINC FINGER, RING-CH-TYPE 31 281 - -
Vivi1g07864 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 226 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07864 Vivi-Chr1 215749629 215751344 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07864 134 280 C3H Transcription Factor Family AT5G05830 39.474 5.49e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07864 - - gmx:100791720 319.316