Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07860 ATGGCCAAACTATACTCTACTTGCCTTTGCAATCTCTTCATATCACTTTATTTTTACTTCTTCACTTGCTTAGTTATGAGTACTAAGAAAAACATCACCACTGATGAATATGCACTTCTTTCATTCAAATCATCTATCATCTTAGACCCCTATCATGTGCTTAGTAATTGGTCAATATCCACTAGTTCATGCAATTGGGTTGGTGTTACTTGTGATGATCATCATGGAAGAGTAAAAACATTGAATCTTAGTAACATGGCCCTTCAAGGTACCATTTCACCTCAATTAGGAAATCTATCTTTCCTTGCTTTTCTTGATTTACAAAGCAATAGTTTCCATGGTGAGTTGCCACAAGAGTTACTTCATTTGAAAAGACTGAAGTTTTTGGATTTGAGTTACAATGGTTTTGTTGGAGAGATTCCTTTGAAGATAGGGGAGTTATCAAAACTTCAACATTTGGACCTTGGATATAATAATATTGTTGGATTTATTCCTCAATCTATATCCAATTTGTCATTGTTGGAGTATCTAAGTTTGCAATCAAATTTCATTGGAGAAACTATTCCACTTGTTATTGGTAAACTTCAAAGGTTGAGAATTTTGGATGTTAAAAATAACAAGCTATCAGGAATCATTCCATCAACAATTTCAAACATGTCTTCCCTTGAAGAAATCGGCTTATTGAAAAATTCTCTATCAGGAGAAATTCCAAAAGGGATTGGTGATCTTACAAACCTGATAACATTGAACCTTCAATCTAATCTTCTCACTGGCAACATATTAATGTTGAACAACTCATCTTTGCAAAAGTTAGGTCTTGGTTTTAATAATCTCTCTGGAATTCTTCCATCAAATGTTTGTCAAGGACTTCCAAATCTTAGAAAACTCTATCTTTATGGTAATGATTTTTCTGGTAAGATGCCGAATGTTTGGCGTTATTGTAAAGAATTGGAAGATTTGGAGCTATCTTTCAATAATTTTGACAAAGGACCTATTCCTGCTGAAATTGGAAACTTGACAAAGCTTCAATCTTTGTATCTTACTAGCACCAACTTGAAAGGTGAAATACCAGTTTCCCTCTTCAACATCTCTTCGATGATAGAGATAATCCTTGAAGGAAACGATTTAAATGGAACTCTTCCGGGCGAGTTGTGTAATCAACTTCCTCAACTTGAAAAGTTTTCTCTATTCGGTAATCATTTGGAAGGAACCGTTCCACGATCGATTGGCAACTGTACATTGTTACAAATATTAACTTTCCAGGATAACTTTTTTTCAGGTTCGATACCGGTGGAGATTGGCAATCTCAATCAACTTCAGTTTCTACAACTGGGAAATAACAGCTTGAGTGGACATGTTCCTTCAAATGTCTTCAACATTTCGACATTGGAATATTTTCATCTTGATCTAAATTCTCTCTCTGGCGTGCTTCCGTCAAATATGGGATTAGGCCTTCCAAACCTTCTACAATTACACATGTATGGAAACAGGTTTGTTGGAAAAATTCCAAATACTATTTCCAATGCTTCGAATCTTGTCATAATTGACTTGAGTTTGAATGAATTTAGCGGAGTTATACCTAACTCATTTGGAAGTTTAAGATTCCTTGAATCACTAATCATAGGTGGAAATAATTTGACAATAGATGAGTCTCTTGAATTCAACTTCCTAACTTCACTAACAAGATGCAGAAACTTGAAAATTCTTGAAATTTCAGAGATTAGTTTACCATTAAAACTTCCCAAGTCCATTGGAAACTTATCTCTAGAACATTTTTGGGCAGATTCTTGTGGAATTAATGGAAATATTCCGCTAGAAATCGGAAACATGAGCAACTTGGTTCGATTATCTCTGAGTAGGAACGATTTAAGTGGACAAATCCCTCGTACAATTAAAGAGTTACAGAAACTTCAATCTTTAGGCCTTAACTACAATGGACTTCAAGGATCTATAATTGATGAGCTTTGCGAAATTAGGAGTTTGAGTGAGTTGAATTTAACAAGCAACAAGTTTTTTGGAGTGTTGCCAACATGTTTGGGAAATATGACTTCTCTTAGAAAGATTCACATTGGATCTAACATGTTAACCTCTACAATACCTTCCTCCTTTTGGAATCTCAAAGATATTTTAGAGGTAAACTTGTCCTCTAATGCTTTAATCGGAAATATTCCATTCGAGATTAAGAATTTGAGAGCTCTTGTGCTATTAGATTTGTCTGGAAATCAAATTTCAAACAACATTCCAACAGCCATAAGTTTCTTGACAACCTTAGAAACTCTCTCCTTAGCAAATAACAAATTGGAAGGGCCTATCCCAGCATCACTTGGTCAAATGCTAAGTTTGAGCTTTTTGGACTTGTCTCAAAATCTTATAACCGGTGTGATCCCGAAATCTTTGGAGTCACTTTCTTATCTTAGATACATGAATGTCTCATACAATGGATTGCAAGGAGAGATTCCTAATGGAGGGCCTTTCAAGAAATTTAGAGCTCAATCTTTCATGAGTAATGAAGCACTTTGTGGTAGTCCTCACTTTCAAGTACCTCCATGTGATAAACGAATTCGGAAAAAGTCAATGAAAAAGATGATATTAATCATATGCATATCATGCATAATTGTTGTGTTAGGCCTTCTAGCTATTGCATGCATAATAGTTCAAATGTTGAAGAGGAAAAAAGTTGAAAATCCACTAGAAAAGGATTTATCAACTAATTTAGGGGATTTAAAAAGGATCTCCTATGATGAACTTGTGCAGGCAACTGATGGATTCAATGAGAGTAACTTGCTTGGAAAGGGTGGTTTTGGATCTGTGTATCAAGGAATGCTTTCTAGTGGAAAGATGGTAGCAATTAAAGTACTTGACTTGGAATTAGAAGTAGCATCAAGAAGTTTTGATGCAGAATGCAAGGCAATGCGCAATCTTCGGCATCGGAATCTTGTTGAGGTTATTACTAGTTGTTCAAATGTAAATTTCAAATCTTTGGTGATGGAGTTTATGTCAAATGGAAGTTTGGAAAAATGGTTATACTCTAATAACTATTTTTTAGATTTCTTGCAAAGGTTGAATATAATGATCGATGTTGCATCTGCATTGGAGTATCTCCATCACGGTTCTTCAATACCAGTGGTTCATTGTGATCTGAAGCCTAGTAATGTGTTACTTGATAAAAATATGGTTGCACATGTGAGTGATTTTGGCATTTCTAAACTCTTGGATGAAGGACAATCTAAAACTCATACAAGGACGCTAGCCACTATTGGTTATGTTGCACCAGAGTATGGTTCTAAAGGAGTGATTTCAGTTAAAGGAGATGTTTACAGCTATGGAATAATGTTAATGGAAATCTTCACAAGAAAGAAACCAACAAATGAAATGTTTGCAGGAGAATTAACCTTGAAAACTTGGATTAGTGAATCAATGGTTAATTCAGTTATGGAAGTTGTGGATTTCAACTTAGTCTCTCAACATGATAAAGAAATTCATGAATTTTTAGCTCATGTATCATCTGTTTTGGCTTTAGCATTGAGGTGTTGTGAAGACTCACCAGAGGCACGGATTAATATGATTGATGTAACTGCATCATTAATCAAAATCAAGACCTTATTCATCCATTGA 3615 0.3494 MAKLYSTCLCNLFISLYFYFFTCLVMSTKKNITTDEYALLSFKSSIILDPYHVLSNWSISTSSCNWVGVTCDDHHGRVKTLNLSNMALQGTISPQLGNLSFLAFLDLQSNSFHGELPQELLHLKRLKFLDLSYNGFVGEIPLKIGELSKLQHLDLGYNNIVGFIPQSISNLSLLEYLSLQSNFIGETIPLVIGKLQRLRILDVKNNKLSGIIPSTISNMSSLEEIGLLKNSLSGEIPKGIGDLTNLITLNLQSNLLTGNILMLNNSSLQKLGLGFNNLSGILPSNVCQGLPNLRKLYLYGNDFSGKMPNVWRYCKELEDLELSFNNFDKGPIPAEIGNLTKLQSLYLTSTNLKGEIPVSLFNISSMIEIILEGNDLNGTLPGELCNQLPQLEKFSLFGNHLEGTVPRSIGNCTLLQILTFQDNFFSGSIPVEIGNLNQLQFLQLGNNSLSGHVPSNVFNISTLEYFHLDLNSLSGVLPSNMGLGLPNLLQLHMYGNRFVGKIPNTISNASNLVIIDLSLNEFSGVIPNSFGSLRFLESLIIGGNNLTIDESLEFNFLTSLTRCRNLKILEISEISLPLKLPKSIGNLSLEHFWADSCGINGNIPLEIGNMSNLVRLSLSRNDLSGQIPRTIKELQKLQSLGLNYNGLQGSIIDELCEIRSLSELNLTSNKFFGVLPTCLGNMTSLRKIHIGSNMLTSTIPSSFWNLKDILEVNLSSNALIGNIPFEIKNLRALVLLDLSGNQISNNIPTAISFLTTLETLSLANNKLEGPIPASLGQMLSLSFLDLSQNLITGVIPKSLESLSYLRYMNVSYNGLQGEIPNGGPFKKFRAQSFMSNEALCGSPHFQVPPCDKRIRKKSMKKMILIICISCIIVVLGLLAIACIIVQMLKRKKVENPLEKDLSTNLGDLKRISYDELVQATDGFNESNLLGKGGFGSVYQGMLSSGKMVAIKVLDLELEVASRSFDAECKAMRNLRHRNLVEVITSCSNVNFKSLVMEFMSNGSLEKWLYSNNYFLDFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDKNMVAHVSDFGISKLLDEGQSKTHTRTLATIGYVAPEYGSKGVISVKGDVYSYGIMLMEIFTRKKPTNEMFAGELTLKTWISESMVNSVMEVVDFNLVSQHDKEIHEFLAHVSSVLALALRCCEDSPEARINMIDVTASLIKIKTLFIH 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07860 1204 Gene3D Transferase(Phosphotransferase) domain 1 999 1201 - -
Vivi1g07860 1204 SUPERFAMILY L domain-like 378 478 - -
Vivi1g07860 1204 FunFam Leucine-rich repeat receptor protein kinase EMS1 191 285 - -
Vivi1g07860 1204 Pfam Protein kinase domain 924 1190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07860 1204 SMART LRR_typ_2 778 801 IPR003591 -
Vivi1g07860 1204 SMART LRR_typ_2 658 681 IPR003591 -
Vivi1g07860 1204 SMART LRR_typ_2 290 313 IPR003591 -
Vivi1g07860 1204 SMART LRR_typ_2 436 460 IPR003591 -
Vivi1g07860 1204 SMART LRR_typ_2 195 218 IPR003591 -
Vivi1g07860 1204 SMART LRR_typ_2 339 363 IPR003591 -
Vivi1g07860 1204 SMART LRR_typ_2 388 412 IPR003591 -
Vivi1g07860 1204 SMART LRR_typ_2 266 289 IPR003591 -
Vivi1g07860 1204 SMART LRR_typ_2 610 634 IPR003591 -
Vivi1g07860 1204 SMART LRR_typ_2 147 171 IPR003591 -
Vivi1g07860 1204 SMART LRR_typ_2 682 705 IPR003591 -
Vivi1g07860 1204 SMART LRR_typ_2 485 509 IPR003591 -
Vivi1g07860 1204 SMART LRR_typ_2 99 123 IPR003591 -
Vivi1g07860 1204 SMART LRR_typ_2 730 754 IPR003591 -
Vivi1g07860 1204 SUPERFAMILY L domain-like 56 377 - -
Vivi1g07860 1204 FunFam Serine-threonine protein kinase plant-type 903 998 - -
Vivi1g07860 1204 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1042 1054 IPR008271 GO:0004672|GO:0006468
Vivi1g07860 1204 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 288 560 - -
Vivi1g07860 1204 Gene3D Phosphorylase Kinase; domain 1 893 998 - -
Vivi1g07860 1204 Gene3D Ribonuclease Inhibitor 34 144 IPR032675 -
Vivi1g07860 1204 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 32 190 - -
Vivi1g07860 1204 Gene3D Ribonuclease Inhibitor 230 551 IPR032675 -
Vivi1g07860 1204 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 561 854 - -
Vivi1g07860 1204 ProSitePatterns Protein kinases ATP-binding region signature. 929 951 IPR017441 GO:0005524
Vivi1g07860 1204 PANTHER OS04G0122200 PROTEIN 429 1199 - -
Vivi1g07860 1204 SMART LRR_sd22_2 730 749 - -
Vivi1g07860 1204 SMART LRR_sd22_2 610 636 - -
Vivi1g07860 1204 SMART LRR_sd22_2 778 804 - -
Vivi1g07860 1204 SMART LRR_sd22_2 195 221 - -
Vivi1g07860 1204 SMART LRR_sd22_2 147 173 - -
Vivi1g07860 1204 SMART LRR_sd22_2 754 769 - -
Vivi1g07860 1204 SUPERFAMILY Protein kinase-like (PK-like) 906 1195 IPR011009 -
Vivi1g07860 1204 ProSiteProfiles Protein kinase domain profile. 923 1204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07860 1204 Gene3D Ribonuclease Inhibitor 552 858 IPR032675 -
Vivi1g07860 1204 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Vivi1g07860 1204 Gene3D Ribonuclease Inhibitor 145 229 IPR032675 -
Vivi1g07860 1204 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 999 1204 - -
Vivi1g07860 1204 Pfam Leucine rich repeat 756 815 IPR001611 GO:0005515
Vivi1g07860 1204 Pfam Leucine rich repeat 147 182 IPR001611 GO:0005515
Vivi1g07860 1204 Pfam Leucine rich repeat 197 256 IPR001611 GO:0005515
Vivi1g07860 1204 Pfam Leucine rich repeat 267 327 IPR001611 GO:0005515
Vivi1g07860 1204 Pfam Leucine rich repeat 659 719 IPR001611 GO:0005515
Vivi1g07860 1204 SMART serkin_6 923 1202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07860 1204 SUPERFAMILY RNI-like 484 821 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07860 Vivi-Chr1 215526557 215531548 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07860 586 823 Receptor kinase-like Gene Family AT3G47570 32.917 1.40e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vivi1g07860 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07860 - K13420 gmx:100784397 1234.94