Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07858 TATACAGGTGAAATTCCAGACTCTTTCTTCAACCTCTCTTCTATGATATATATCAACTTTGACAGAAACAATTTAAATGGAACTCTCCCAAACAAGATGTGTGATCAACTTCCTCAACTTGAAATGTTTACTGTCCATGTTAATCATTTGGAGGGACTTATCCCACAATCAATTGGCAATTGCTCATCGTTACAATATTTAAGTTTAATGGATAACTTTTTTACAGGTTCAATACCGATGGAGATTAGCCATCTCAATCAACTTCTGATTCTAGAATTGGGAAATAACAGTCTGAATGGATATATTCCTTCAAAAGTCTTCAACATTTCAACATTGGAAAATTTGCTTCTTGAACTAAATTCTTTCTCTGGCATGCTTCCATCAAATATGGGATTAGGACTTCCAAACCTACAAGAACTACACATGTATGGAAACAGGTTTTTTGGAAATATTCCAAATTCTATTTCCAATGCTTCAAATCTCTTTCATCTTGATTTGAGTGAAAATGAATTTAGTGGAATTATACCTAGTTCTTTGGGAGATTTAAGACTCATCCAAAATCTCTTCTTAGCTAACAATAATTTAACAATGGATGATTCTCATGAGTTCAACTTCCTAACTTCCCTTACAAGTTGTAGAAATTTGAAATACCTTGAAATATCAGACAATAGTTTACTATCAAAACTTCCCAACTCTATTGGAAACTTATCTGTGGAAAACTTTGAGGCAAGTTCTTGTGGAATTAATGGAAATATTCCACTAGAAATCGGAAACATGAGCAATATGATTCGATTGTCTCTAAGTAGTAATGATTTAAATGGTCCAATCCCTATAACAATTAAAGGGTTACATAAACTTCAATATTTAGATCTTGATGACAATGGACTTCAAGGATCTATAATTGATGAGCTATGTGGAATTAGGAGTTTGAGTGAATTGTATTTAACAAGCAATAACTTTTTTGATGTGTTACCAACATGCATGGGAAATATGACTTCTCTCAGAAAGTTTCACATTGGATCTAATAATTTGAATTCTAATATACCTTCTTCATTTTGGAATCTCAAAGATATTTTAGAGGTAAACTTATCCTCTAATGTTTTAATGGGAAATCTTCCATTTGAGATTAACAATTTGAGAGCTCTTGTACTATTAGATGTGTCAAAAAATAAAATCTCAGGCAATATTCCACCAACAATAAGTTTCTTGAAAACTTTAGAAACTCTTTCCTTAGCAAATAACAAATTGAAAGGACCTATCCCAACATCCCTTAGTGACATTGTAAGTTTGAGCTTCTTGGATTTGTCTCAAAATCTTATAACCGGTGAGATTCCGAAATCCTTAGAGTTAGTTTCTAGTCTGAAATACCTTAATTTGTCATACAATAGACTAGAAGGAGAGATTCCAAATGGAGGACCTTTCAAAAGCTTCACAACTCAATCTTTCATTCATAACAAAGCACTTTGTGGAAGTCCTCTCTTACAAGTACCTCCATGTGATAAACATATTAGGAAAATGTCAGTGAGAAAGAAGTTGTTAATCATATGCAGTTCATCCATAATTGTTGTGTTCGGCATTTTGATTGTAGTGTGCATGATACTTCGAATGCATAAAAGGAAGAAGGTTGGAAATCCAATTGAAAAGGATTTATCAACTTTAGGGGCTCCAAGAAGGATTTCCTATTATGAACTTTTGCAAGCAACTAATGGATTTAGTGAGAGTAATTTGCTTGGAAAGGGTGGTTTTGGATCTGTGTATCAAGGAATGCTTTCTAGTGGGAAAATGGTAGCAGTTAAAGTACTTGACTTGAACTTGGAAGCAACATCAAGAAGCTTTGATGTAGAATGCAAAGCCATGCGCAACCTTCGACATCGAAATCTCGTTCAAGTCATTACTAGTTGTTCAAATGTTGATTTCAAATCTATAGTGATGGAGTTTATGACAAATGGAAGTTTGGAAAAATGGTTATACTCTGATAACTATCGTTTGGATTTCTTGCAAAGGCTGAATATAATGATAGATGTTGCATATGCATTGGAGTATCTCCATCATGGCTCTTCAATAACGGTGGTTCATTGTGATTTGAAACCTAGTAATGTGTTACTAGATGAAGATATGGTTGCACATGTACGTGATTTTGGCATTTCCAAGCTCTTGGATGAAGAACATTCTAAAACTCATACTGAGACTTTAGCTACTCTTGGTTATGTTGCACCAGAGTATGGTTCTAAGGGAGTCATTTCTGTTAAGGGAGATGTGTACAGTTATGGAATAATGCTAATGGAAATCTTCACAGCAAAGAAACCAACAAATGAAATGTTTGCAGAAGAATTAACATTGAAAACTTGGATTAGTGAATCAATGGCCAAATCAATTATGGAAATTGTGGATTTCAACTTAGCCTCACAGCATGAGAAAGAAATTCGTGAAATTTTAGACTTAGCATTGAGATGTTGTGAAGATTCACCCGACGCACGAATTAATATGACAGATGTAACTACATCATTGATCAAAATCAAAACCTCATTCCTCCTATTAAAAAAGGAAATCATGAAATAA 2559 0.3376 YTGEIPDSFFNLSSMIYINFDRNNLNGTLPNKMCDQLPQLEMFTVHVNHLEGLIPQSIGNCSSLQYLSLMDNFFTGSIPMEISHLNQLLILELGNNSLNGYIPSKVFNISTLENLLLELNSFSGMLPSNMGLGLPNLQELHMYGNRFFGNIPNSISNASNLFHLDLSENEFSGIIPSSLGDLRLIQNLFLANNNLTMDDSHEFNFLTSLTSCRNLKYLEISDNSLLSKLPNSIGNLSVENFEASSCGINGNIPLEIGNMSNMIRLSLSSNDLNGPIPITIKGLHKLQYLDLDDNGLQGSIIDELCGIRSLSELYLTSNNFFDVLPTCMGNMTSLRKFHIGSNNLNSNIPSSFWNLKDILEVNLSSNVLMGNLPFEINNLRALVLLDVSKNKISGNIPPTISFLKTLETLSLANNKLKGPIPTSLSDIVSLSFLDLSQNLITGEIPKSLELVSSLKYLNLSYNRLEGEIPNGGPFKSFTTQSFIHNKALCGSPLLQVPPCDKHIRKMSVRKKLLIICSSSIIVVFGILIVVCMILRMHKRKKVGNPIEKDLSTLGAPRRISYYELLQATNGFSESNLLGKGGFGSVYQGMLSSGKMVAVKVLDLNLEATSRSFDVECKAMRNLRHRNLVQVITSCSNVDFKSIVMEFMTNGSLEKWLYSDNYRLDFLQRLNIMIDVAYALEYLHHGSSITVVHCDLKPSNVLLDEDMVAHVRDFGISKLLDEEHSKTHTETLATLGYVAPEYGSKGVISVKGDVYSYGIMLMEIFTAKKPTNEMFAEELTLKTWISESMAKSIMEIVDFNLASQHEKEIREILDLALRCCEDSPDARINMTDVTTSLIKIKTSFLLLKKEIMK 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07858 852 PANTHER OS04G0122200 PROTEIN 2 131 - -
Vivi1g07858 852 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 210 503 - -
Vivi1g07858 852 SMART serkin_6 571 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07858 852 ProSiteProfiles Leucine-rich repeat profile. 453 475 IPR001611 GO:0005515
Vivi1g07858 852 Gene3D Transferase(Phosphotransferase) domain 1 647 847 - -
Vivi1g07858 852 Gene3D Phosphorylase Kinase; domain 1 554 646 - -
Vivi1g07858 852 FunFam Serine-threonine protein kinase plant-type 552 646 - -
Vivi1g07858 852 Pfam Protein kinase domain 572 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07858 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 690 702 IPR008271 GO:0004672|GO:0006468
Vivi1g07858 852 SUPERFAMILY L domain-like 244 494 - -
Vivi1g07858 852 SUPERFAMILY L domain-like 2 237 - -
Vivi1g07858 852 Gene3D Ribonuclease Inhibitor 1 200 IPR032675 -
Vivi1g07858 852 SMART LRR_sd22_2 283 306 - -
Vivi1g07858 852 SMART LRR_sd22_2 212 238 - -
Vivi1g07858 852 SMART LRR_sd22_2 403 429 - -
Vivi1g07858 852 SMART LRR_sd22_2 85 111 - -
Vivi1g07858 852 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 209 - -
Vivi1g07858 852 Pfam Leucine Rich Repeat 453 471 IPR001611 GO:0005515
Vivi1g07858 852 Pfam Leucine Rich Repeat 214 236 IPR001611 GO:0005515
Vivi1g07858 852 Pfam Leucine Rich Repeat 136 157 IPR001611 GO:0005515
Vivi1g07858 852 Pfam Leucine rich repeat 381 440 IPR001611 GO:0005515
Vivi1g07858 852 Pfam Leucine rich repeat 308 368 IPR001611 GO:0005515
Vivi1g07858 852 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 647 849 - -
Vivi1g07858 852 ProSiteProfiles Leucine-rich repeat profile. 429 451 IPR001611 GO:0005515
Vivi1g07858 852 Gene3D Ribonuclease Inhibitor 201 506 IPR032675 -
Vivi1g07858 852 SUPERFAMILY Protein kinase-like (PK-like) 551 836 IPR011009 -
Vivi1g07858 852 ProSiteProfiles Protein kinase domain profile. 571 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07858 852 ProSitePatterns Protein kinases ATP-binding region signature. 577 599 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07858 Vivi-Chr1 215419770 215430052 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07858 3 844 Receptor kinase-like Gene Family AT3G47570 38.523 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vivi1g07858 Pkinase 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07858 - K13420 mtr:25485995 1081.24