Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07853 ATGGAAGATCCTAAGTCTCTTAGGCATATGTTTACAACAGAGTTGCTGGGAATATTCTTTTTAATATTTGCTGGAGGTGGTACAATAACTACAGATCGCTACAACGATAATGTAGTGACAGTACCAGGAATTGCTGGTCTTTGGGGATTTACAATGTCCATATTTGTATCCATTCTTGGTTTTACATATGGTGCTCATTTTTGTAATTTAATCACAATTCTTCATGTAATTTTCAAAAGTCCTCCATTAATGCAGGTACCAATACATGTAGTTGCTCAAGATGTTGGCTCAATTTTTGCAACCGATATTCTCAAACTTATATTTAGTGAGAATAAAAATCGTTTTGTGGGAATAGTACCTGCGGGTTCTAACCTTCAAATTTTTGTTATAGAATTTATAATCAGTTTCTATACTTTGTTCATCATTCTTGGAGTTTTTATTGATAGAAGAAAGATCCGTGAATTAGTTGGACAGATAATTGGAGCCACACTTATTTTTAGTGCGTTGTTTGTTGGGTACTGA 522 0.3391 MEDPKSLRHMFTTELLGIFFLIFAGGGTITTDRYNDNVVTVPGIAGLWGFTMSIFVSILGFTYGAHFCNLITILHVIFKSPPLMQVPIHVVAQDVGSIFATDILKLIFSENKNRFVGIVPAGSNLQIFVIEFIISFYTLFIILGVFIDRRKIRELVGQIIGATLIFSALFVGY 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07853 173 PRINTS Major intrinsic protein family signature 85 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07853 173 PRINTS Major intrinsic protein family signature 130 148 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07853 173 PRINTS Major intrinsic protein family signature 9 28 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07853 173 PRINTS Major intrinsic protein family signature 48 72 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07853 173 Gene3D Glycerol uptake facilitator protein. 2 173 IPR023271 -
Vivi1g07853 173 Pfam Major intrinsic protein 10 170 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07853 173 PANTHER AQUAPORIN NIP2-1 9 172 IPR034294 -
Vivi1g07853 173 SUPERFAMILY Aquaporin-like 6 172 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07853 Vivi-Chr1 215247426 215248236 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07853 13 172 Major Intrinsic Protein MIP AT4G18910 43.713 2.40e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07853 K09874 - gmx:100798526 148.673