Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07848 ATGATATCAAAAAGAGGCATTAATGGGATGGAAGTCCCTAAAAAAAGGACTGGCCTTGTGTTTAGAGAGACTGCTACTGCCACTGCTAATACCAGAGACGATAAAAATCGCGCCCGAGCGGGATGCAGTAATGCACCCAACCCTCCTGTTCAGAAAAGGTCTTCTGAAAAAGCTAAAGTTTTGAGGCCATCGACGCTGTCATCTTCGAGTCGCAAGGAGGTAGTTGGTAGTTCTCGGAGCCGTAGAACATATGCTAACCCGGTTAAACCACTAAATGAGCCTCGGAGAATATTATCTTCGGGTGGTCTTCCAGCTGAAGAGAAAGGTAGAGAGTGTACTAATGTGATTAGGACGGCAGTAGGAAAATCTGGTGCAGTATCAAATTTAAGATCTCAGAGGAATTTCAATCAAAGACCTGGATTGCGTCAACGAGAAACTGAAAGCATTGGTCCGGCTACACGAGCAGTTTCTAGCAAGTATGGATTGAGGAACCTCAGATGCAGCACTTTAACTGATGCCATCCCTTCCTCCTGCTCATCATCAGATTCTAGTTCTACCCTTAATAGAAGTAAGACTATTGTGACAAAAATGAGAAGCTCTGGAGGAGAAAGTAGCTCCACTCTTAAAGGGAAGAAGGTGACCGGGTCTTCATTGGAAAGATTGAATTCTGGCACCAGAAATGGCAGACCTAGTTCTGATACAAGAGGGTCTAGAAATATTCCTCCTCTGAGGGACAATAGCAGAGCATCGGTTAGAACTGAAAGAACGGTTAGTGGTTATGCCAGGGGAAGATTTTCTAACCAAGGAAATGAGAACTCAAAAGAAAACAATGGGGGCAATAGCAGAGCATCAGTGAAAACTGAAAGAACGGTTAGTGGTTATGGCAGGGGAAGATTTTCTAAACAAGGAAATGAAAACTCAAAAGAAAAGAATGAGTCCCGTGATGTGTTGCCTAATTCTCCTCATTCTATTGATATTAACTCTCCTGTCACCGAGGAGTTTCGTGGTGTTATGCCTATGTCTCATGAAGAACACGGTACCCGTCATTCTCTAATAATTCAGGATGGCTTTCGGCGGCGCCACAATATGGATGGTATTTCTGAGGTATTATTGGCACTTGAGAGAATGGAACAAAATGAAGAGTTGACTCATGAGCAAATTGATTTACTAGAGACCAACTCTCTTCTTGATGGACTTAGCTTCTATGATACTCATAGAGACATGCGGCTGGATATTGATGACATGTCATACGAGGAACTCTTAGCTCTCGAAGAGAGAATGGGTACAGTTAGTACAGCACTGTCAGAGGAAGCACTCTCTAATAGTCTTAAAAAAAGTGTCTATGAGTCTACACCTTCAGATGATGCAGCCGACTGTGTTGATGAGGATAACAATGAAATCAAATGCTGCATTTGCCAGGAGGAATATGTTGTTGGAGATGAAATCGGAAGACTGCAATGCACGCATAAATATCATGTTGATTGTATACAAGAATGGTTGAGGCTGAAGAATTGGTGCCCTATGTGCAAAGAGTCAGCTGCACTGTCCAACTCGTCCTCATCGTCATCTCATTAG 1575 0.4305 MISKRGINGMEVPKKRTGLVFRETATATANTRDDKNRARAGCSNAPNPPVQKRSSEKAKVLRPSTLSSSSRKEVVGSSRSRRTYANPVKPLNEPRRILSSGGLPAEEKGRECTNVIRTAVGKSGAVSNLRSQRNFNQRPGLRQRETESIGPATRAVSSKYGLRNLRCSTLTDAIPSSCSSSDSSSTLNRSKTIVTKMRSSGGESSSTLKGKKVTGSSLERLNSGTRNGRPSSDTRGSRNIPPLRDNSRASVRTERTVSGYARGRFSNQGNENSKENNGGNSRASVKTERTVSGYGRGRFSKQGNENSKEKNESRDVLPNSPHSIDINSPVTEEFRGVMPMSHEEHGTRHSLIIQDGFRRRHNMDGISEVLLALERMEQNEELTHEQIDLLETNSLLDGLSFYDTHRDMRLDIDDMSYEELLALEERMGTVSTALSEEALSNSLKKSVYESTPSDDAADCVDEDNNEIKCCICQEEYVVGDEIGRLQCTHKYHVDCIQEWLRLKNWCPMCKESAALSNSSSSSSH 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07848 524 SMART ring_2 469 509 IPR001841 -
Vivi1g07848 524 MobiDBLite consensus disorder prediction 1 106 - -
Vivi1g07848 524 SUPERFAMILY RING/U-box 464 513 - -
Vivi1g07848 524 Pfam Ring finger domain 468 510 IPR001841 -
Vivi1g07848 524 MobiDBLite consensus disorder prediction 196 330 - -
Vivi1g07848 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 429 514 IPR013083 -
Vivi1g07848 524 MobiDBLite consensus disorder prediction 260 288 - -
Vivi1g07848 524 ProSiteProfiles Zinc finger RING-type profile. 469 510 IPR001841 -
Vivi1g07848 524 MobiDBLite consensus disorder prediction 196 246 - -
Vivi1g07848 524 MobiDBLite consensus disorder prediction 60 85 - -
Vivi1g07848 524 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 52 514 IPR045191 GO:0061630
Vivi1g07848 524 Coils Coil 373 393 - -
Vivi1g07848 524 FunFam E3 ubiquitin-protein ligase arkadia 431 515 - -
Vivi1g07848 524 MobiDBLite consensus disorder prediction 302 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07848 Vivi-Chr1 214745883 214748657 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07848 352 513 C3H Transcription Factor Family AT2G15530 43.210 1.39e-36 142