Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07847 ATGATATCAAAAAGAGGCATTAATGGGATGGAAGTCCCTAAAAAAAGGACTGGCCTTGTGTTTAGAGAGACTGCTACTGCCACTGCTAATACCAGAGACGATAAAAATCGCGCCCGAGCGGGATGCAGTAATGCACCCAACCCTCCTGTTCAGAAAAGGTCTTCTGAAAAAGCTAAAGTTTTGAGGCCATCGACGCTGTCATCTTCGAGTCGCAAGGAGGTAGTTGGTAGTTCTCGGAGCCGTAGAACATATGCTAACCCGGTTAAACCACTAAATGAGCCTCGGAGAATATTATCTTCGGGTGGTCTTCCAGCTGAAGAGAAAGGTAGAGAGTGTACTAATGTGATTAGGACGGCAGTAGGAAAATCTGGTGCAGTATCAAATTTAAGATCTCAGAGGAATTTCAATCAAAGACCTGGATTGCGTCAACGAGAAACTGAAAGCATTGGTCCGGCTACACGAGCAGTTTCTAGCAAGTATGGATTGAGGAACCTCAGATGCAGCACTTTAACTGATGCCATCCCTTCCTCCTGCTCATCATCAGATTCTAGTTCTACCCTTAATAGAAGTAAGACTATTGTGACAAAAATGAGAAGCTCTGGAGGAGAAAGTAGCTCCACTCTTAAAGGGAAGAAGGTGACCGGGTCTTCATTGGAAAGTAGCTCCACTCTTAAAGGGAAGAAGGTGACCGGGTCTTCATTGGAAAGATTGAATTCTGGCACCAGAAATGGCAGACCTAGTTCTGATACAAGAGGGTCTAGAAATATTCCTCCTCTGAGGGACAATAGCAGAGCATCGGTTAGAACTGAAAGAACGGTTAGTGGTTATGCCAGGGGAAGATTTTCTAACCAAGGAAATGAGAACTCAAAAGAAAACAATGGGGGCAATAGCAGAGCATCAGTGAAAACTGAAAGAACGGTTAGTGGTTATGGCAGGGGAAGATTTTCTAAACAAGGAAATGAAAACTCAAAAGAAAAGAATGAGTCCCGTGATGTGTTGCCTAATTCTCCTCATTCTATTGATATTAACTCTCCTGTCACCGAGGAGTTTCGTGGTGTTATGCCTATGTCTCATGAAGAACACGGTACCCGTCATTCTCTAATAATTCAGGATGGCTTTCGGCGGCGCCACAATATGGATGGTATTTCTGAGGTATTATTGGCACTTGAGAGAATGGAACAAAATGAAGAGTTGACTCATGAGCAAATTGATTTACTAGAGACCAACTCTCTTCTTGATGGACTTAGCTTCTATGATACTCATAGAGACATGCGGCTGGATATTGATGACATGTCATACGAGGAACTCTTAGCTCTCGAAGAGAGAATGGGTACAGTTAGTACAGCACTGTCAGAGGAAGCACTCTCTAATAGTCTTAAAAAAAGTGTCTATGAGTCTACACCTTCAGATGATGCAGCCGACTGTGTTGATGAGGATAACAATGAAATCAAATGCTGCATTTGCCAGGAGGAATATGTTGTTGGAGATGAAATCGGAAGACTGCAATGCACGCATAAATATCATGTTGATTGTATACAAGAATGGTTGAGGCTGAAGAATTGGTGCCCTATGTGCAAAGAGTCAGCTGCACTGTCCAACTCGTCCTCATCGTCATCTCATTAG 1623 0.4319 MISKRGINGMEVPKKRTGLVFRETATATANTRDDKNRARAGCSNAPNPPVQKRSSEKAKVLRPSTLSSSSRKEVVGSSRSRRTYANPVKPLNEPRRILSSGGLPAEEKGRECTNVIRTAVGKSGAVSNLRSQRNFNQRPGLRQRETESIGPATRAVSSKYGLRNLRCSTLTDAIPSSCSSSDSSSTLNRSKTIVTKMRSSGGESSSTLKGKKVTGSSLESSSTLKGKKVTGSSLERLNSGTRNGRPSSDTRGSRNIPPLRDNSRASVRTERTVSGYARGRFSNQGNENSKENNGGNSRASVKTERTVSGYGRGRFSKQGNENSKEKNESRDVLPNSPHSIDINSPVTEEFRGVMPMSHEEHGTRHSLIIQDGFRRRHNMDGISEVLLALERMEQNEELTHEQIDLLETNSLLDGLSFYDTHRDMRLDIDDMSYEELLALEERMGTVSTALSEEALSNSLKKSVYESTPSDDAADCVDEDNNEIKCCICQEEYVVGDEIGRLQCTHKYHVDCIQEWLRLKNWCPMCKESAALSNSSSSSSH 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07847 540 FunFam E3 ubiquitin-protein ligase arkadia 447 531 - -
Vivi1g07847 540 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 58 530 IPR045191 GO:0061630
Vivi1g07847 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 446 530 IPR013083 -
Vivi1g07847 540 MobiDBLite consensus disorder prediction 276 304 - -
Vivi1g07847 540 ProSiteProfiles Zinc finger RING-type profile. 485 526 IPR001841 -
Vivi1g07847 540 MobiDBLite consensus disorder prediction 60 85 - -
Vivi1g07847 540 Pfam Ring finger domain 484 526 IPR001841 -
Vivi1g07847 540 MobiDBLite consensus disorder prediction 131 154 - -
Vivi1g07847 540 Coils Coil 389 409 - -
Vivi1g07847 540 SMART ring_2 485 525 IPR001841 -
Vivi1g07847 540 SUPERFAMILY RING/U-box 480 529 - -
Vivi1g07847 540 MobiDBLite consensus disorder prediction 1 109 - -
Vivi1g07847 540 MobiDBLite consensus disorder prediction 318 332 - -
Vivi1g07847 540 MobiDBLite consensus disorder prediction 196 346 - -
Vivi1g07847 540 MobiDBLite consensus disorder prediction 196 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07847 Vivi-Chr1 214745883 214748657 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07847 368 529 C3H Transcription Factor Family AT2G15530 43.210 1.29e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07847 - - vvo:131644867 1018.07