Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07838 ATGGAGGGTGATAATTCAACTTGCAATGAAAACATCAAGGTAGTTTTAAATGGAAACGATGATGCAATAAAAATGTGTGATAACTCAAGCATTGAAGATCCTGTTCCTCTTTTGCAGAAGTTGGTAGCCGAGGTGGTGGGAACATTCTTCTTAATATTTGTTGGATGTGGTTCTGTAGTTACAAATCTTAACAATGATAATGCAGTAACACTTCCTGGAATTGCAATTGTTTGGGGACTTTGTGTTGTGGTATTGGTATATTCTCTTGGTCATATCTCTGGTGCTCATTTTAATCCTGCTGTCACAATTGCTCATGCATCTACCAAAAGATTTCCATTAGTGCAGGTACCACCATATATAATTGCTCAACTCGTTGGGTCACTACTTGCAAGTGGGGCTCTCAAACTTATATTTACTGGCAAAGAAAACCGCTTTGTGGGAACACTTCCAGCCGGATCTAACCTCCAAGCTCTTATCATCGAATTTATAATTACTTTCTATCTTATGTTCATCATTTCAGGAGTTGCCACCGATGACAGAGCGGTCGGTGAATTGGCTGGACTTGCAGTTGGATCTACAATTATTCTAAACGTGTTGTTTGCTGGTCCAATCACAGGAGCATCAATGAATCCAGTCAGAAGTTTAGGTCCAGCTATTATGCACCACGAATATAGAGGAATATGGATTTATGTGGTTTCACCTATTTTAGGAGCTTTGGCTGGTACATGGACGTATACTTTTATCAGAATTTCAAAGAAACCAGTACGTGAGCTCACAAAGAGTAGTTCATTCCTTAAAGAAATGGGAAGCAAGTGA 816 0.3934 MEGDNSTCNENIKVVLNGNDDAIKMCDNSSIEDPVPLLQKLVAEVVGTFFLIFVGCGSVVTNLNNDNAVTLPGIAIVWGLCVVVLVYSLGHISGAHFNPAVTIAHASTKRFPLVQVPPYIIAQLVGSLLASGALKLIFTGKENRFVGTLPAGSNLQALIIEFIITFYLMFIISGVATDDRAVGELAGLAVGSTIILNVLFAGPITGASMNPVRSLGPAIMHHEYRGIWIYVVSPILGALAGTWTYTFIRISKKPVRELTKSSSFLKEMGSK 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07838 271 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07838 271 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07838 271 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07838 271 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07838 271 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07838 271 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07838 271 PANTHER AQUAPORIN NIP2-1 21 264 IPR034294 -
Vivi1g07838 271 Gene3D Glycerol uptake facilitator protein. 6 260 IPR023271 -
Vivi1g07838 271 SUPERFAMILY Aquaporin-like 36 258 IPR023271 -
Vivi1g07838 271 CDD MIP 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07838 271 NCBIfam MIP family channel protein 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07838 271 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Vivi1g07838 271 Pfam Major intrinsic protein 36 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07838 Vivi-Chr1 214162906 214164164 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07838 11 271 Major Intrinsic Protein MIP AT5G37820 57.854 1.53e-100 295