Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07822 ATGGTAGCACCGATAACTGAAAATGGAATCCGTAGCAGAAAGAAGTCATCAAGAGGACACCACAGGTTTGTAGGAGTTCGTCAAAGGCCGTCGGGGAGATGGGTGGCCGAGATCAAGGACTCTTTACAGAAAGTTAGGCTTTGGCTCGGAACATTCGACACGGCTGAAGAAGCCGCTCGTGCTTATGATACAGCTGCTAGAGCTTTGAGAGGTGCTAATGCTAGAACCAACTTTGAGTTGCCAGAATCTGCAACAAGTGGAGGTGATGCTAAGCGAGGTTCGGGTTCGGGTTCTAAGTTCGTGCTAGAGAATACTGAGCCTTTTTCTTTCGAAGATGTGAGTGATTCAGGCTCAGGTTCTGATGGTCTTCTTGGTGCACTCAAGGCAAAGCTTTGTGATGGAAAAGAAGGGAAATTTTCATTTTCTATTCCTTCTGTTAGTATGGTTTCAAAATCAACACAAAACAGTTCTTGGAAGAAAGAATCATCATTACCACCATCATCATCAGCTACATATTGTCTCTCTCAGATGAATGAAACTCATGCTAACCCTAACACTATACCTAGTTCATTGAGTACTTCATCAAACACTTTTGCTAAGAGTTTGATTATCCCAAATCATGATCAAGAATTATGTCAAACTCAAACACCATCTATGACAAACATGTTATGGTCCAATGAAATGGAAAACCAATATCCTTGGCCTATTCAGATGAATCATGTTCTTCATGACAATAGTACTAGTACTGATCTTCTTGCATCTGGAAGTGTGTCGAATTTTCCGTGGCCACTAATAGATTCCAATATTGACATGACATGTATAGATCAAGGGATGTTAAATGGTAACAGAAGTGATCAAATGAATATGATGAACATGCAGTTACCTCAAGTTGGTGGATCAAATAGTGAAGGGTTTTGGACAATGGATCAGCAGCAACAACAGTTTGTGCAATGTGAGGAGAATAATAGTTGGTTTGGTTCCGGTGGATCTTGGAATCCTTTTATCTATGTGCCTTCTGAGCTAGCTTGA 1029 0.4101 MVAPITENGIRSRKKSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEEAARAYDTAARALRGANARTNFELPESATSGGDAKRGSGSGSKFVLENTEPFSFEDVSDSGSGSDGLLGALKAKLCDGKEGKFSFSIPSVSMVSKSTQNSSWKKESSLPPSSSATYCLSQMNETHANPNTIPSSLSTSSNTFAKSLIIPNHDQELCQTQTPSMTNMLWSNEMENQYPWPIQMNHVLHDNSTSTDLLASGSVSNFPWPLIDSNIDMTCIDQGMLNGNRSDQMNMMNMQLPQVGGSNSEGFWTMDQQQQQFVQCEENNSWFGSGGSWNPFIYVPSELA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07822 342 SUPERFAMILY DNA-binding domain 23 79 IPR016177 GO:0003677
Vivi1g07822 342 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Vivi1g07822 342 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Vivi1g07822 342 MobiDBLite consensus disorder prediction 79 98 - -
Vivi1g07822 342 FunFam ethylene-responsive transcription factor RAP2-11 21 80 - -
Vivi1g07822 342 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Vivi1g07822 342 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Vivi1g07822 342 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Vivi1g07822 342 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Vivi1g07822 342 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Vivi1g07822 342 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 195 - -
Vivi1g07822 342 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07822 Vivi-Chr1 213161512 213162854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07822 11 78 AP2-EREBP Transcription Factor Family AT5G19790 69.118 1.74e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g07822 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07822 - - vvo:131640287 622.854