Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07800 ATGGCTTCAGGTGCAATTTTCTCGTCGCTGCGGCGGCGAAGATCGCCGACGTTGGAAGCTTTTCTTGCTCCGGTTGACTTAAGCGACGTCGCTTTGGTTCAAACTCTTGTTACGGTGGTGAACGAGCTTGTTTCTTGTTTCTCGAAGTGTTCGTTTTTCTTCCAGAGGAAGAACACGCGGTCTCTGATTAGAAAGGTTGAGGTTTTTCAGTTGCTTTTGGAGTATTTGAATGATTCCGGTTGTAAGGGTGGTAAGGGTTGTAATCTTCCGCCTACGGCTTTGCTTTGTTTGAAGGAGCTTTATTTGTTGCTGTATAGGTCGAAGATTCTTCTTGATTACTGCGCGCAATCGAGTAAGTTGTGGCTTTTGCTTCAGAATCATTCGATTTCGGGGCATTTTCATGATTTGAATCAGGAGATTTCGACTCTTTTGGATGTTTTTCCTGTTAGGGAGGTTGGTTTGAGTAAGGATGTTAGGGAGCAGGTTGAGCTTTTGTTGAAGCAATCGAGGAGGGCTAAGTTGTTTATTGATATTGGAGATGATGCGCTTAGGATTCGATTTTTTGAGTTTCTTGATGAGTTTGAGAATGGGAGGATTCCGGAATCGGATGAATTGCGGTGGTTTTATGTTGAGAAGTTGCGGATTGGTGATGCTGGTTGTTGTAGAAGTGAAATTGAGGCTTTGGAGGAGCAGATTGTTAACCATGAGGGGGATATTGAGCCGACGATTTCTGTGCTTAAAGGGTTGGTGGCTATGACGCGGTATTGTAGGTTTTTGATTTTTGGTTTTGAGGTAGATGAAGTTGATTTGGAAATTGGAAATCAGAAGAAGCCGAAGATGGGTTTGATTACTCAAGAAATTGCGGAAACGTTTTTAACTGTTCCTAAGGATTTTTGTTGTCCGATATCGTTGGATTTGATGAAAGACCCGGTGATTATTTCCACGGGTCAAACTTATGATAGGAGTTCCATTTCTAGGTGGATGGATGAAGGGCATACAACTTGTCCAAAAACAGGTCAAACACTTGCTCACACTCGTCTTGTCTCAAATCGTGCCTTGAGGAATTTGATTGTGCAGTGGTGCAATGCTCATGGAGTTCCTCTTGATCCACCGGAGGTGATGGATGCGATGGGTGAAGTTTTTGGATCTGCATCTCCCACCAAAGCTGCCCTTGAAGCAAATAGAGCTACTGCCAATCTTCTCATTCAACAGCTAGCTAATGGATCGCAATCCGGGAAGACTATAGCTGCTCGGGAGATTCGATTGCTTGCGAAAACAGGCAAAGAAAATCGCGCCTTCCTTGCAGAAGCGGGGGCAATTCCTTATCTCCGGAACTTACTTTCGACGCCTAATTCTGTTGCTCAGGAGAATTCAGTTACTGCATTGCTCAACCTATCCATTTACGACAAGAACAAAAGCAGGATCATGGACGAGACAGGTTGTCTTGGATCAATTGTTGATGTGTTGAGATTTGGGCATACAACAGAAGCAAGGGAAAATGCTGCTGCAACATTGTTCAGCCTATCAGCTGTTCATGACTATAAGAAGATAATTGCAGACGAGACTGGAGCCGTTGAAGCCTTAGCAGGGCTGTTGCAAAACGGGACTCCTAGAGGAAAGAAGGATGCAGTGACAGCTTTGTTCAATCTTTCCACACACACCGAGAATTGTGTTAGAATGATCGAGGCAGGAGCAGTAACAGCTCTAGTCGAAGCTTTGGGTTACGAAGGAGTTGCCGAGGAAGCAGCAGGTTCCCTGGCCTTGATTGTTCGGCAGCCCTTTGGAGCCAAAGCCGTAGTCAAGCAGGAAGAAGCCGTAGCAGGATTAATAGGAATGATGCGATGTGGAACGCCGAGGGGCAAGGAAAACGCAGTTGCAGCATTACTCGAGTTATGTCGGAGTGGAGGTTCAGCTGCAACCGAAATGGTGGTTAAGGCACCAGCTTTGGCTGGATTACTTCAAACCCTATTATTTACCGGAACAAAGCGTGCTAGACGAAAAGCCGCATCACTCGCGAGAGTGTTTCAGAGATGCGAAATTGCATCTCTACATTATGGTGGATTAGGTGTAGGCTATGCATATGCTAGCAATTCAGCTCAAACTAGAGATACAAGCTTTGCTGCTGGTGATGTTTCAGTACCAATGTCAATCTCTGTACCTGTATTATAG 2169 0.4509 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLVTVVNELVSCFSKCSFFFQRKNTRSLIRKVEVFQLLLEYLNDSGCKGGKGCNLPPTALLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPVREVGLSKDVREQVELLLKQSRRAKLFIDIGDDALRIRFFEFLDEFENGRIPESDELRWFYVEKLRIGDAGCCRSEIEALEEQIVNHEGDIEPTISVLKGLVAMTRYCRFLIFGFEVDEVDLEIGNQKKPKMGLITQEIAETFLTVPKDFCCPISLDLMKDPVIISTGQTYDRSSISRWMDEGHTTCPKTGQTLAHTRLVSNRALRNLIVQWCNAHGVPLDPPEVMDAMGEVFGSASPTKAALEANRATANLLIQQLANGSQSGKTIAAREIRLLAKTGKENRAFLAEAGAIPYLRNLLSTPNSVAQENSVTALLNLSIYDKNKSRIMDETGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKIIADETGAVEALAGLLQNGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVEALGYEGVAEEAAGSLALIVRQPFGAKAVVKQEEAVAGLIGMMRCGTPRGKENAVAALLELCRSGGSAATEMVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEIASLHYGGLGVGYAYASNSAQTRDTSFAAGDVSVPMSISVPVL 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07800 722 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 367 IPR013083 -
Vivi1g07800 722 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 438 480 IPR000225 GO:0005515
Vivi1g07800 722 SUPERFAMILY RING/U-box 281 367 - -
Vivi1g07800 722 Pfam Armadillo/beta-catenin-like repeat 428 466 IPR000225 GO:0005515
Vivi1g07800 722 CDD RING-Ubox_PUB 295 347 IPR045210 -
Vivi1g07800 722 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 523 565 IPR000225 GO:0005515
Vivi1g07800 722 PANTHER U BOX DOMAIN-CONTAINING 60 678 - -
Vivi1g07800 722 SUPERFAMILY ARM repeat 397 675 IPR016024 -
Vivi1g07800 722 Gene3D - 397 673 IPR011989 -
Vivi1g07800 722 FunFam RING-type E3 ubiquitin transferase 293 368 - -
Vivi1g07800 722 ProSiteProfiles U-box domain profile. 293 367 IPR003613 GO:0004842|GO:0016567
Vivi1g07800 722 SMART Ubox_2 297 360 IPR003613 GO:0004842|GO:0016567
Vivi1g07800 722 Pfam U-box domain 294 364 IPR003613 GO:0004842|GO:0016567
Vivi1g07800 722 SMART arm_5 512 552 IPR000225 GO:0005515
Vivi1g07800 722 SMART arm_5 553 591 IPR000225 GO:0005515
Vivi1g07800 722 SMART arm_5 592 633 IPR000225 GO:0005515
Vivi1g07800 722 SMART arm_5 427 467 IPR000225 GO:0005515
Vivi1g07800 722 FunFam RING-type E3 ubiquitin transferase 370 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07800 Vivi-Chr1 212164983 212167505 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07800 1 722 U-box Gene Family AT1G29340 68.435 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07800 - - gmx:100811153 1192.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g07800 1 212164983 212167505 Vivi1g07800 1 212164983 212167505 ECH