Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07798 ATGGCTTCATCTTCAAATGTTCAACGCAAGGCATCATCGTCACATCAAGTTCAACAAAAGAAATATGCAAATCTTCCTTTGAAGTCTTGTTCGATTACTTATGATGAACTGGAGGTTCTCTGCGAAACAATGGTGGATTTTGAAAATCTCATGGCACATAATTTCAAAACCAAAACTGCAATGCTAGTACAAAATTCTTCTGAACTTCCCCCTCAGAAAAAGCCTCCTCCTTCTGTTATTCCATCCTCTTCCACAACCACAAACAGAAACCGTCCACTTCTTTCTACACCAGTTCTAAACCCTCAACCACTAAATGCTATCTCAACCACCTCCATCGCAGGCTCTTCATCCTCCTTATCCTCTTCTACTATCCCTGTCAGAACAGGGTTGGATACTCTGAAAGCTGCTCATGACTCCAAGATGGATCATGTTGCTACTGGTAAGTTGTGGAAAATCTTTGAGAAGGATATTCAGATTTATTTTCTGAACATCCAGAAGAGATGCTTGGCTGATGCATTTGGATCTTCTGGCTACTTTTTGGAGTTAGATGATGGTTGTCCTGTGATGGAGGAAGTTCAGAGAAGTTTAAATTCCATTTCTCCTTTTCTGTCTAAGACTTATATGATGGTTAGTGATCCTTCCACTAATGCCATTGTTTCATGGAGTTCTACTAGTCGGAGTTTCGTTGTTTGGAATCAACCTGATTTTTCAAAGAATTTGTTGCCTAAATTCTTTAAGCATAATAACTTCTCGAGTTTCGTAAGACAGCTTAACACCTATGGCTTTAGAAAGGTTGGTCATGAACAATGGGAATTTGCAAATGAAGATTTTGTAAGAGATCAACCACATCGTTTGAAGAAAATCCACAGGCGCAAAGCAGTTTTTAGCCATTCGCGTAATGCTAATGGCCAACGGGCGGCTGGTGCTGCTCCATTAACAGAATCAGAACGTCGGAATTATAAAGCTCAGATAGAAAAACTTAGACAGGAAAAAGAACAACTGCTGATCGAACGTCAGAAGCAAGAAGAGGAATGGAAACAGAATGAGATGCAGTTGCATTACTCGAAGGATCGTTTGCAACAGCTGGAGCTGAATCAACAAAGTTTGCTCGCTTCTGTTGGTCAAGTGCTGCAGAAATCGGCGGAGGATGCAAGTCTTCAGCCACTGTCGGGAGACACTGGCAGAAAACGAAGTTATCTGCCAAATGCTCCCTTTAATGATTTATCTAGCATTGAAACTCGGAAGGAGACTTCTCCTGAGTTAGCTAGAGAGAACGCTGAGAGTATGAACGTTCTCTCTGTAAACATGGAACGATTGGATCTGCTCGAATCATCGTTGTCGTTTTGGGAGAATTTTGTAAAGGAAGTTCGCGACACATCTTATGAAACTCGTTCGAACTTAGACTTTGATGATTCGATGAATCGTGCTCATAGTCCCGTAATGTCTGGTGTGCAAATAGGCTTTGAAGATCAGCCCGAGTCATCAGGAAACGAAATAAACTCGCTGTTAGATATAGTCGATATTCCTGATCTCGATCCTCTTGAACTTGACCTGGACGATATCTTTGTTCGTGATCCTGTTGCACCCGAGCCAGCTGTTATCGCGGTTCCTGATCCCGATCCTGTTGCACCTGGGACAGATGTTATCGTGGTTCCTGATTCCCCTGCACCTGAGCCGGCTGTTACCGCGGTTCCTGATTTGGTTGCACCTGAGCCACCTGTTATCATGGTTCCTGATTCCCCTGCACCAGAGCCGGCGGTTACAGTAATTCCTGACTCTGCTGCACCGAACGAACAGCCTGTTGAAACAATCCTGGGTACTAATGAATTTAATATACCATTTTGGCAAAAACTCTTGATGGAAAATCCTGATGAGGATGAATCAGAAAGTGCTTCTGAACTTAGCAAATATTGCTGGAGCCGGAGGAGTCTTAAGCCCCGTCAAATTGATAAAGCAGGGAAAGCTTAG 1968 0.4294 MASSSNVQRKASSSHQVQQKKYANLPLKSCSITYDELEVLCETMVDFENLMAHNFKTKTAMLVQNSSELPPQKKPPPSVIPSSSTTTNRNRPLLSTPVLNPQPLNAISTTSIAGSSSSLSSSTIPVRTGLDTLKAAHDSKMDHVATGKLWKIFEKDIQIYFLNIQKRCLADAFGSSGYFLELDDGCPVMEEVQRSLNSISPFLSKTYMMVSDPSTNAIVSWSSTSRSFVVWNQPDFSKNLLPKFFKHNNFSSFVRQLNTYGFRKVGHEQWEFANEDFVRDQPHRLKKIHRRKAVFSHSRNANGQRAAGAAPLTESERRNYKAQIEKLRQEKEQLLIERQKQEEEWKQNEMQLHYSKDRLQQLELNQQSLLASVGQVLQKSAEDASLQPLSGDTGRKRSYLPNAPFNDLSSIETRKETSPELARENAESMNVLSVNMERLDLLESSLSFWENFVKEVRDTSYETRSNLDFDDSMNRAHSPVMSGVQIGFEDQPESSGNEINSLLDIVDIPDLDPLELDLDDIFVRDPVAPEPAVIAVPDPDPVAPGTDVIVVPDSPAPEPAVTAVPDLVAPEPPVIMVPDSPAPEPAVTVIPDSAAPNEQPVETILGTNEFNIPFWQKLLMENPDEDESESASELSKYCWSRRSLKPRQIDKAGKA 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07798 655 FunFam Heat shock transcription factor 1 195 292 - -
Vivi1g07798 655 PRINTS Heat shock factor (HSF) domain signature 240 252 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g07798 655 PRINTS Heat shock factor (HSF) domain signature 202 225 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g07798 655 PRINTS Heat shock factor (HSF) domain signature 253 265 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g07798 655 MobiDBLite consensus disorder prediction 382 422 - -
Vivi1g07798 655 SUPERFAMILY "Winged helix" DNA-binding domain 198 291 IPR036390 -
Vivi1g07798 655 MobiDBLite consensus disorder prediction 67 102 - -
Vivi1g07798 655 Coils Coil 310 344 - -
Vivi1g07798 655 Gene3D - 194 292 IPR036388 -
Vivi1g07798 655 MobiDBLite consensus disorder prediction 296 317 - -
Vivi1g07798 655 ProSitePatterns HSF-type DNA-binding domain signature. 241 265 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g07798 655 Pfam HSF-type DNA-binding 202 291 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g07798 655 MobiDBLite consensus disorder prediction 79 102 - -
Vivi1g07798 655 SMART hsfneu3 198 291 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g07798 655 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 193 414 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07798 Vivi-Chr1 212039152 212049436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07798 195 494 HSF AT4G18880 45.545 4.65e-64 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi1g07798 HSF_DNA-bind 5.2e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07798 K09419 - gmx:100820566 341.273