Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07788 ATGGCTGATCATTCATCAAGCAATGGAAACCATGAAATTGCTATGAATGTAAATGGTGATTCCTCCAAAAATTGTGAAGATAACTCAGAATATAAAGACTATGTGCCTCTTTTGCAAAAGTTGGTGGCAGAATTGGTGGGGACATACTTCTTGATATTTGCAGGATGTGCTGCTGTTGTTGTAAACCTTGACAATGACAAAGTGGTAACACATCCTGGGATTTCAATTGTTTGGGGCCTCACTGTTATGGTTTTGGTTTATTCTCTCGGTCACATCTCTGGTGCTCATTTTAATCCTGCGGTCACCATCGCTCACGCGTCAACCAAAAGATTTCCCCTTAAAGAGGTGCCAGCTTATTTGATAGCACAAGTTCTTGGATCCACTCTTGCAAGTGGAACACTTAGACTTATATTCAATGGTAATAAAGATCATTTTTCCGGAACACTTCCGGCTGGTTCTGATCTTCAGGCATTTGTGGTTGAATTCATAATCACTTTTTATCTTATGTTCATTATCTCTGGAGTTGCCACGGATAATAGAGCGATCGGTGAATTGGCTGGACTTGCAGTTGGATCTACGGTACTTCTAAATGTCATGTTTGCCGGGCCAATTACGGGAGCTTCAATGAACCCTGCAAGAAGTTTAGGGCCTGCTATTGTTCATAAGGAGTATAGAGGAATATGGATATATTTAGTCGCAACGACTCTAGGTGCCGTGGCGGGTACATGGGCGTATACTTTCATCCGGTACACGAACAAGCCGGTGCGCGAAATTAGTAAGAGTGCATCTTTTCTTAAAGGGGTACAAAATGGGGAAGCAAGGTGA 825 0.423 MADHSSSNGNHEIAMNVNGDSSKNCEDNSEYKDYVPLLQKLVAELVGTYFLIFAGCAAVVVNLDNDKVVTHPGISIVWGLTVMVLVYSLGHISGAHFNPAVTIAHASTKRFPLKEVPAYLIAQVLGSTLASGTLRLIFNGNKDHFSGTLPAGSDLQAFVVEFIITFYLMFIISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHKEYRGIWIYLVATTLGAVAGTWAYTFIRYTNKPVREISKSASFLKGVQNGEAR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07788 274 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1g07788 274 NCBIfam MIP family channel protein 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07788 274 CDD MIP 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07788 274 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07788 274 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07788 274 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07788 274 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07788 274 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07788 274 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07788 274 PANTHER AQUAPORIN NIP2-1 16 264 IPR034294 -
Vivi1g07788 274 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Vivi1g07788 274 Gene3D Glycerol uptake facilitator protein. 2 261 IPR023271 -
Vivi1g07788 274 Pfam Major intrinsic protein 36 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g07788 274 SUPERFAMILY Aquaporin-like 35 258 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07788 Vivi-Chr1 211405256 211407031 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07788 1 269 Major Intrinsic Protein MIP AT5G37810 53.285 1.15e-101 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07788 K09874 - gmx:100786924 464.922