Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07755 ATGTTGATACCGCTTTCAATTGTTGATGATGTTGCTGTCTTGGATTTAGGTCAAGAACTTCCTCGTACCCAGAACAACATGTTGCCTGTGTTTGTTCTCTTTGATTCTCGTACCATGTCTCACTACCCCCACCCAACAACAACAACAACACCTTCTTCTTCTTCGTCTCACAACCACAACAATGTTCCAACAAGATTAATGTCTCACAACCGCAACAACGTTTCATCAAGACCAACCGTCTCTATGGTAGATGAAACTCTTCTCTATGATTCTTCTATGGCCAACAACATTCCAAGAAGATCAAGGTCATTTAATCGTCACCGCCACCAGCACCACAACAATGGTACTAGAGCTTCTTCCCCTGTCATCGGTGCTGCTGCTGTGGTGATGGGTGTTCAAGAACATGTTACAACATCAACAGGAGATGCAGAATCCATCTGTTCCATTTGTCTTGTTGACTTGTCTAATGCTTCTTCCGCTCCGATTGGGTTGCGCTGCTCTCATATTTTTCATACTCACTGCATTCAAAAATGGATTAACATTCGAAAAACCTGTCCTCTCTGTCGCGCCAATGTTTAA 579 0.4318 MLIPLSIVDDVAVLDLGQELPRTQNNMLPVFVLFDSRTMSHYPHPTTTTTPSSSSSHNHNNVPTRLMSHNRNNVSSRPTVSMVDETLLYDSSMANNIPRRSRSFNRHRHQHHNNGTRASSPVIGAAAVVMGVQEHVTTSTGDAESICSICLVDLSNASSAPIGLRCSHIFHTHCIQKWINIRKTCPLCRANV 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07755 192 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Vivi1g07755 192 SMART ring_2 147 188 IPR001841 -
Vivi1g07755 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 192 IPR013083 -
Vivi1g07755 192 SUPERFAMILY RING/U-box 146 192 - -
Vivi1g07755 192 PANTHER RING ZINC FINGER PROTEIN 98 192 - -
Vivi1g07755 192 MobiDBLite consensus disorder prediction 42 78 - -
Vivi1g07755 192 Pfam Ring finger domain 147 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07755 Vivi-Chr1 210646915 210647493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07755 137 192 Rapid Response to Elicitors AT3G05200 39.286 9.94e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07755 - K10664 vvo:131593264 248.825