Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07754 ATGTTGATACCGCTTTCAATTGTTGATGATGTTGCTGTCTTGGATTTAGGTCAAGAACTTCCTCGTACCCAGAACAACATGTTACCTGTGTTTGTTCTCTTTGATTCTCGTGCCATGTCTCACTACCACCATCCAACAACATCAACAACAACACCTTCTTCTTCGTCTCACAACCACAACAATGTTCCAACAAGATTGATGTATCACAACCGCAACAACGTTTCATCAAGACCAACCGTCTCTGTGGTTGATGAAACTCTTCTCTATGATTCTTCTATGGCCAACAACATTCCAAGAAGATCAAGGTCATTTAATCATCCCCACCACCACCACAACAATGGTACTAGAGCTTCTTCCACTGTCATCGGTGCTGCTGCTGTGGTGATGGGTGTTCAAGAACATGTTACAACATCAACAGGAGATGCAGAATCCATCTGTTCCATTTGTCTTGTTGACTTGTCTAATGCTTCTTCCACGCCGATTGGGTTGCGCTGCTCTCATGTTTTTCATACTCACTGCATTCAAAAATGGATTAACATTCGAAAAACCTGTCCTCTCTGTCGCGCCAATGTTTAA 576 0.4271 MLIPLSIVDDVAVLDLGQELPRTQNNMLPVFVLFDSRAMSHYHHPTTSTTTPSSSSHNHNNVPTRLMYHNRNNVSSRPTVSVVDETLLYDSSMANNIPRRSRSFNHPHHHHNNGTRASSTVIGAAAVVMGVQEHVTTSTGDAESICSICLVDLSNASSTPIGLRCSHVFHTHCIQKWINIRKTCPLCRANV 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07754 191 SMART ring_2 146 187 IPR001841 -
Vivi1g07754 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 191 IPR013083 -
Vivi1g07754 191 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Vivi1g07754 191 SUPERFAMILY RING/U-box 145 191 - -
Vivi1g07754 191 PANTHER TARGET OF ERK KINASE MPK-1 51 191 - -
Vivi1g07754 191 MobiDBLite consensus disorder prediction 43 63 - -
Vivi1g07754 191 Pfam Ring finger domain 146 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07754 Vivi-Chr1 210601380 210601955 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07754 136 191 Rapid Response to Elicitors AT3G05200 41.071 8.52e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07754 - K23789 vvo:131593264 266.544