Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07748 ATGGAATCGAAAAACCCTACTAGGTTTAAGCTTGGGAAACAGTCGTCGTTAGCACCGGAACGAGATAGGGAAGAGGATGAAGTTCATCATGAGGGTGATGCTACTATTGATTCTGGAGTTAGGTTGATGTATTCGGCGAATGAAGGTGATGTTGATGGGATTCGTGAGGTGTTGGAGTCTGGTGTGAGTGTGAATTTTAGGGATGTTGATGGACGTACTGCTCTTCATATTGCGGCTTGTCAGGGGTTGACACATGTTGTTGATTTGTTGCTTGATAAAGGGGCTGATGTTGATCCTAAAGATCGATGGGGGAGCACGCCACTTGCAGATGCTATATTCTATAAAAACAACGACGTGATCAAACTATTGGAGAATCATGGAGCAAAGCCTCTGATGACCTCTATGCATGTTGATCATGCACGTGAAGTCCCGGAATATGAAATCGATCCTAAAGAACTTGATTTTACCAACAGTAAGGAAATAACAAAGGGAACTTTCTGTATTGCGTTGTGGCGTGGGATCGAGGTTGCGGTAAAAAAGCTCGGGGAAGACGTCATAATTAATGAGGAGAAAGTGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAGATTCGTCATCCAAATGTAGTCCAATTTCTTGGTGCTGTGACTCAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGGGAGATCTTCGTGATTTCATGAAAAGAAAAGGAGCTTTAAAACCAAGTACAGCTGTTAGATTTGCACTTGATATTGCTAGGGGAGTGGGTTATTTGCATGAAAATAAGCCATCACCCATTATTCACCGTGATCTCGAGCCTTCTAATATATTGCGGGATGATTCCGGCCACCTAAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTAGCAGTTAAAGAAGACAAGCCTCTAACTTGCCAAGATACTTCTTGTCGCTATGTGGCTCCTGAAGTTTTTAATCAAGAGGAATATGATACTAAAGTGGATGTATTCTCATTTGCACTAATTCTACAAGAGATGATTGAAGGCTGCCCTCCCTTTTCTGCAAAGCGTGATGATGAGGTTCCTAAGGTTTATGCTTCAAAAGAGAGACCGCCCTTCCGAGCTCCTACTAAGCATTATTCTCACGGAATTCGAGAGTTGATTGAAGAGTGTTGGAATGAGAATCCAGGAAAGAGGCCAACATTCAGACAAATAATAACAAGGCTGGAATCCATCTACAATACAATTGGTCAAAAAGGACGTTGGAAGGTTAAACCATTGAGGTGCTTTCAGAATCTGGAAGCTTTGTTGAAGAGAGATCGTTCTAAATTAAGCAGTCGGGGCAGTTCATCTCGCTCCTCTACTAGCCGTATATGA 1374 0.425 MESKNPTRFKLGKQSSLAPERDREEDEVHHEGDATIDSGVRLMYSANEGDVDGIREVLESGVSVNFRDVDGRTALHIAACQGLTHVVDLLLDKGADVDPKDRWGSTPLADAIFYKNNDVIKLLENHGAKPLMTSMHVDHAREVPEYEIDPKELDFTNSKEITKGTFCIALWRGIEVAVKKLGEDVIINEEKVKAFRDELALFQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLRDFMKRKGALKPSTAVRFALDIARGVGYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGVSKLLAVKEDKPLTCQDTSCRYVAPEVFNQEEYDTKVDVFSFALILQEMIEGCPPFSAKRDDEVPKVYASKERPPFRAPTKHYSHGIRELIEECWNENPGKRPTFRQIITRLESIYNTIGQKGRWKVKPLRCFQNLEALLKRDRSKLSSRGSSSRSSTSRI 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07748 457 SUPERFAMILY Ankyrin repeat 41 133 IPR036770 -
Vivi1g07748 457 PIRSF ILK 1 432 - -
Vivi1g07748 457 Pfam Ankyrin repeats (3 copies) 42 132 IPR002110 GO:0005515
Vivi1g07748 457 ProSiteProfiles Protein kinase domain profile. 120 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07748 457 SUPERFAMILY Protein kinase-like (PK-like) 146 409 IPR011009 -
Vivi1g07748 457 CDD STKc_MAP3K-like 161 408 - -
Vivi1g07748 457 Gene3D - 5 139 IPR036770 -
Vivi1g07748 457 ProSiteProfiles Ankyrin repeat profile. 70 102 IPR002110 GO:0005515
Vivi1g07748 457 Pfam Protein tyrosine and serine/threonine kinase 173 408 IPR001245 GO:0004672|GO:0006468
Vivi1g07748 457 Gene3D Transferase(Phosphotransferase) domain 1 140 427 - -
Vivi1g07748 457 PRINTS Tyrosine kinase catalytic domain signature 227 240 IPR001245 GO:0004672|GO:0006468
Vivi1g07748 457 PRINTS Tyrosine kinase catalytic domain signature 266 284 IPR001245 GO:0004672|GO:0006468
Vivi1g07748 457 PRINTS Tyrosine kinase catalytic domain signature 379 401 IPR001245 GO:0004672|GO:0006468
Vivi1g07748 457 FunFam serine/threonine-protein kinase STY46-like 148 231 - -
Vivi1g07748 457 ProSiteProfiles Ankyrin repeat region circular profile. 70 102 - -
Vivi1g07748 457 SMART ANK_2a 37 66 IPR002110 GO:0005515
Vivi1g07748 457 SMART ANK_2a 103 132 IPR002110 GO:0005515
Vivi1g07748 457 SMART ANK_2a 70 99 IPR002110 GO:0005515
Vivi1g07748 457 MobiDBLite consensus disorder prediction 15 32 - -
Vivi1g07748 457 FunFam Integrin-linked protein kinase family 18 146 - -
Vivi1g07748 457 MobiDBLite consensus disorder prediction 1 32 - -
Vivi1g07748 457 FunFam Os01g0748600 protein 141 428 - -
Vivi1g07748 457 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 146 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07748 Vivi-Chr1 209836146 209842360 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07748 8 429 MAP Kinase Kinase Kinase AT4G18950 68.852 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vivi1g07748 PK_Tyr_Ser-Thr 9.9e-54 CL0016