Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07738 ATGAATCATACTTTTTCACTCCAAACCCAGATTTGCTTGGAAGCCATGGCTTTTCCAAATCCATCCATGTCAGATTCTCCACAGAGAAAGATGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAAAACACGACGAATCGCCAAGTGACTTTCTGCAAACGCAGAAACGGCTTACTCAAAAAAGCTTATGAACTATCCGTTCTTTGTGATGCAGAAGTTGCTCTTATAGTCTTCTCTAGCCGCGGCCGCCTCTACGAATACGCCAATAACAGTGTGAAAGCAACAATTGAAAGGTACAAAAAAGCATGCTCAGATTCATCTGGCACTGGATCTGCTTCTGAGGTTAATGCTCAGTTTTACCAACAAGAAGCAGAAAAATTGCGTGTTCAAATTAGTAACCTGCAGAATAACAACAGGCAAATGATGGGTGAATCTTTGGGATCAATGAATGCAAAAGAACTCAAGAATCTGGAGTCTAAATTAGAAAAAGGAATAAGTAGAATTCGTTCCAAAAAGAATGAGATGTTATTTGCTGAAATTGAATACATGCAGAAGAGGGAGATAGATTTGCACAATAACAACCAACTTCTGAGAGCAAAGATAGCTGAAAGTGAGAGGAACCACCACCATAATATTAACATGAGTGTGTTACCTGGAGGCACAACAAACTATGAATCCATGCAATCTCAGACTCAGCAGCCATATGATTCTCGCGGATACTTTCAAGTTTCCGGATTACAATCCAGTAGTAGTCAGTATGGACGACAAGACCAAATGTCCCTTCAATTAGTGTAA 795 0.4025 MNHTFSLQTQICLEAMAFPNPSMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSGTGSASEVNAQFYQQEAEKLRVQISNLQNNNRQMMGESLGSMNAKELKNLESKLEKGISRIRSKKNEMLFAEIEYMQKREIDLHNNNQLLRAKIAESERNHHHNINMSVLPGGTTNYESMQSQTQQPYDSRGYFQVSGLQSSSSQYGRQDQMSLQLV 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07738 264 ProSiteProfiles K-box domain profile. 117 207 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1g07738 264 ProSitePatterns MADS-box domain signature. 33 87 IPR002100 GO:0003677|GO:0046983
Vivi1g07738 264 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 87 IPR002100 GO:0003677|GO:0046983
Vivi1g07738 264 PRINTS MADS domain signature 53 68 IPR002100 GO:0003677|GO:0046983
Vivi1g07738 264 PRINTS MADS domain signature 68 89 IPR002100 GO:0003677|GO:0046983
Vivi1g07738 264 PRINTS MADS domain signature 33 53 IPR002100 GO:0003677|GO:0046983
Vivi1g07738 264 ProSiteProfiles MADS-box domain profile. 31 91 IPR002100 GO:0003677|GO:0046983
Vivi1g07738 264 Gene3D - 43 109 IPR036879 GO:0003677|GO:0046983
Vivi1g07738 264 PANTHER SERUM RESPONSE FACTOR HOMOLOG 31 219 - -
Vivi1g07738 264 Pfam K-box region 116 201 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1g07738 264 FunFam agamous-like MADS-box protein AGL11 43 126 - -
Vivi1g07738 264 Coils Coil 154 174 - -
Vivi1g07738 264 SMART madsneu2 31 90 IPR002100 GO:0003677|GO:0046983
Vivi1g07738 264 SUPERFAMILY SRF-like 32 103 IPR036879 GO:0003677|GO:0046983
Vivi1g07738 264 CDD MADS_MEF2_like 32 106 IPR033896 GO:0000977|GO:0045944
Vivi1g07738 264 Coils Coil 117 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07738 Vivi-Chr1 209022843 209029143 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07738 29 264 MADS-box Gene Family AT3G58780 67.089 1.78e-105 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi1g07738 K-box 1.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07738 K09264 - gmx:732595 411.764