Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07640 ATGGCACGCACCACTGAGGTACACGACAATTCTTCACCATCATCAACACAAAACCATGAAATCAAAGATAACAAAGCCAATCAAAAAGTTCCATTTTACAAGCTCTTCAATTTCGCGGATCGTCTCGATGTAACACTGATGATCATTGGCACTATCGCTGCCGTGGCTAATGGTTTGTCTCAGCCTCTCATGACACTTATCTTTGGGAAACTCATCAATGCTTTTGGTGGTTCTGATCCATCAGCCATCGTTAAACAAGTTTCTAAGGTATCATTGTTATTTGTTTACCTGGCTGCTGGGGCTGGAATAGCATCATTTCTACAGGTATCATGTTGGATGGTGACTGGAGAAAGACAAGCTGCGAGGATTCGTAGTTTGTACTTGAAAACAATATTGAAACAGGATATTGCGTTTTTCGACACTGAAACAAACACAGGAGAGGTAATTGGTAGAATGTCTGGTGACACAATTCTCATTCAAGATGCAATGGGAGAAAAGGTTGGGAAGTTTGTTCAGCTTGCTTCAAATTTTTTTGGTGGCTTTGTGATCGCGTTTATAAAAGGATGGCGTCTAGCTGTAGTTTTACTTGCATGTATGCCTTGTGTTATTCTTGCTGGTGGTTTCATGTCCATGCTGATGTCTAAAATGTCAAGCCGCGGACAGATTGCTTATGCAGAAGCAGGAAATGTCGTTGATCAAACAGTTGGAGCCATAAGAACAGTTGCATCTTTTACTGGTGAGAAAAAAGCCATAGAGAGATATAATAACAAGATAAAAGTTGCTTATACTACAACAGTTCACCAAGGGATAGTCTCAGGATTAGGAATGGGAACGCTTCTGTTAATCGTCTTCTGCACTTATGGACTTGCCATGTGGTATGGTTCCAAACTAGTTATTGAGAAAGGATATAACGGTGGAAGTGTCATTACTGTGATCATAGCTCTTATGACTGGTGGCATGGCACTAGGTCAAGCATCCCCATGCATAAATGCATTTGCTGCAGGACAAGCAGCAGCTTATAAAATGTTTGAGACGATTAAAAGAAAGCCGAAAATTGATGCATATGACACAAGTGGTGTTGTCTTGGAGGACATAAAGGGAGATATTGAACTCAAAGATGTTTACTTTAGATACCCTGCAAGGCCAGATGTGCAGATATTTGCTGGATTCTCATTGTTTGTTCCTAGTGGCACAACTACTGCTTTGGTGGGTCAAAGTGGAAGTGGAAAGTCTACTGTAATCAGTTTATTGGAAAGATTCTATGATCCTGATGCTGGAGAAGTACTTATAGATGGTGTGAATTTGAAGAATTTGCAGCTTAAATGGATAAGGGAACAGATTGGGTTGGTTAGTCAAGAGCCGATCTTGTTTACTACTAGTATCAGAGAGAATATAGCATATGGGAAAGAAGGTGCAACTGATGAGGAGATAAAAGCAGCAATAACACTTGCTAATGCCAAAAAGTTCATTGACAAACTGCCTCAGGGCCTTGACACCATGGCAGGGCAAAATGGTACTCAACTTTCTGGCGGTCAAAAGCAAAGAATTGCGATCGCGAGAGCAATATTGAAGAACCCGAGAATCCTGCTTCTTGATGAAGCAACAAGTGCATTGGATGCTGAGTCTGAACGTATTGTTCAAGAAGCCTTGGAAAAAATTATATTAAAAAGGACTACTGTTGTCGTTGCACATCGCTTGACAACTATCAGAAATGCTGACACAATAGCAGTAGTTCATCAGGGAAAAATCGTAGAGAGAGGAACTCATAAAGAGTTAACCATGGATGCTTACGGTGCTTATTCTCAACTTATTCGTCTACAAGAAGGAGAAAAAGAAGCTGAAGGTAGCAGAACATCTGAAGCAGATAAGTCAGGTGACTGTTTAAATATAGAAAGTCACATGGCTAGATCTTCCACCCAAAGACACTCTTTTATGAGATCAATAAGCCAAACATCATCAGCGAGTCTTCGACATTCTCAGTCACATAGAGGCTTGTCTGGAGAATTAAAAGAGGCGGATATTGAACAAGGTCAACTTGATAATAAGGAAAAGCCCAAAAGGGTACCTCTAATGCGTTTGGCCAAGTTGAACAAACCTGAGGTTCCTGTCATACTGCTTGGAAGCATTGCTGCAATAATACATGGTGTCGTGTTCCCTATATTTGGCCTCTTGTTTTCATCAGTCATTAGTATGTTTTTTAAACCTCCAGACCAGCAGAGAAAAGAGTCCAGGCTATGGGCACTTCTATATGTAGGTTTGGGTTTGGTTACTCTAGTGGTTTTCCCACTGCAGAATTACTTCTTTGGGATTGCTGGTGGAAAACTTATTGAAAGAGTCCGTTCATTGACATTTGAAAAGATTGTGCACCAAGAAATTAGATGGTTTGACGATCCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGGTTATCTACCGACGCTTCAACTGTGAAAAGTCTTGTTGGTGACACATTGGCCCTTGTTGTGCAAAACCTATCAACGATCACCGCTGGTCTAGTTATAGCATTCACTGCTAATTGGATTCTGGCTTTTATAGTTTTGGCTGTGTCACCTATGGTTCTTATGCAAGGATTCGTTCAGATGAAGTTTCTTAAAGGATTCAGTGCTGATGCCAAGGTGATGTATGAAGAGGCGAGTCAAGTGGCAAATGATGCTGTTAGTAGCATAAGAACTGTTGCATCATTTTGTGCAGAATCAAAGGTGATGGACATGTACAAGAAAAAATGTTTAGGGCCTGAGAAACAAGGTGCTCGCTTGGGGCTTGTTAGTGGAGCAGGATTTGGTTTCTCTTTTTTAGCCCTATATTGCACAAATGCTTTCACTTTCTACATAGGATCTATTTTAGTGCAACACGGGAAAGCAACGTTTCAAGAGGTTTTCAGGGTTTTCTTTTGTTTAACAATGACAGCAATCTCCGTTTCACAGTCTAGTGCATTGGCACCAGACGCTAACAAGGCCAGAGATTCCACGGCTTCAATATTTGAAATTCTTGACAGCAAACCTGATATTGATTCCAGCAGCAAGGAGGGTGTAACACAAGCAACAGTAGTTGGCAATATTGAACTTCAAAATGTTCGCTTTAATTACCCAACAAGGCCACACATTCAAATTTTCAAAGATTTAAGCCTAAGCATCCCGTCTGCAAAGACTGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTTATAAGCCTTTTAGAGAGATTTTATGACCCTGATTCTGGACGCGTGTATCTAGATGGAGTGAATATCAAAGAGTTCAGATTAAGCTGGTTGAGGCAACAAATGGGTTTGGTTGGTCAAGAGCCCATTCTTTTCAACGAAAGCATTCGTGCCAACATAGCTTATGGCAAAGAAGGAGGTGCTACCGAGGATGAGATAATTGCAGCAGCTAAAGCAGCCAATGCACATAGCTTCATAAGTTCTCTTCCAAATGGTTATGAAACCTCTGTTGGGGAAAGAGGCACACAACTATCAGGAGGACAAAAGCAGCGTATTGCTATTGCAAGAGCCATGCTGAAAAACCCGAAAATACTTTTGCTTGATGAGGCGACAAGTGCACTTGATGCGGAGTCAGAGCGTATAGTTCAAGAGGCTCTAGACAAAGTGAGTGTGAACAGAACTACTGTGGTGGTGGCTCACCGTCTTACAACGATTCGAGGGGCGGATACTATAGCAGTAATTAAAAATGGAGTGGTTGCTGAAAAGGGAAGACATGACGTGTTGATGAAGATTACTGATGGTGTTTATGCTTCCTTAGTAGCTCTTCATTCAAGTGCATCATAA 3810 0.4131 MARTTEVHDNSSPSSTQNHEIKDNKANQKVPFYKLFNFADRLDVTLMIIGTIAAVANGLSQPLMTLIFGKLINAFGGSDPSAIVKQVSKVSLLFVYLAAGAGIASFLQVSCWMVTGERQAARIRSLYLKTILKQDIAFFDTETNTGEVIGRMSGDTILIQDAMGEKVGKFVQLASNFFGGFVIAFIKGWRLAVVLLACMPCVILAGGFMSMLMSKMSSRGQIAYAEAGNVVDQTVGAIRTVASFTGEKKAIERYNNKIKVAYTTTVHQGIVSGLGMGTLLLIVFCTYGLAMWYGSKLVIEKGYNGGSVITVIIALMTGGMALGQASPCINAFAAGQAAAYKMFETIKRKPKIDAYDTSGVVLEDIKGDIELKDVYFRYPARPDVQIFAGFSLFVPSGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKNLQLKWIREQIGLVSQEPILFTTSIRENIAYGKEGATDEEIKAAITLANAKKFIDKLPQGLDTMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALEKIILKRTTVVVAHRLTTIRNADTIAVVHQGKIVERGTHKELTMDAYGAYSQLIRLQEGEKEAEGSRTSEADKSGDCLNIESHMARSSTQRHSFMRSISQTSSASLRHSQSHRGLSGELKEADIEQGQLDNKEKPKRVPLMRLAKLNKPEVPVILLGSIAAIIHGVVFPIFGLLFSSVISMFFKPPDQQRKESRLWALLYVGLGLVTLVVFPLQNYFFGIAGGKLIERVRSLTFEKIVHQEIRWFDDPANSSGAVGARLSTDASTVKSLVGDTLALVVQNLSTITAGLVIAFTANWILAFIVLAVSPMVLMQGFVQMKFLKGFSADAKVMYEEASQVANDAVSSIRTVASFCAESKVMDMYKKKCLGPEKQGARLGLVSGAGFGFSFLALYCTNAFTFYIGSILVQHGKATFQEVFRVFFCLTMTAISVSQSSALAPDANKARDSTASIFEILDSKPDIDSSSKEGVTQATVVGNIELQNVRFNYPTRPHIQIFKDLSLSIPSAKTVALVGESGSGKSTVISLLERFYDPDSGRVYLDGVNIKEFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGATEDEIIAAAKAANAHSFISSLPNGYETSVGERGTQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAESERIVQEALDKVSVNRTTVVVAHRLTTIRGADTIAVIKNGVVAEKGRHDVLMKITDGVYASLVALHSSAS 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07640 1269 FunFam ABC transporter B family member 1 1016 1266 - -
Vivi1g07640 1269 Pfam ABC transporter 390 536 IPR003439 GO:0005524
Vivi1g07640 1269 CDD ABC_6TM_Pgp_ABCB1_D2_like 694 1009 - -
Vivi1g07640 1269 CDD ABC_MTABC3_MDL1_MDL2 369 607 - -
Vivi1g07640 1269 SMART AAA_5 396 582 IPR003593 GO:0016887
Vivi1g07640 1269 SMART AAA_5 1053 1240 IPR003593 GO:0016887
Vivi1g07640 1269 FunFam ABC transporter B family member 1 359 608 - -
Vivi1g07640 1269 SUPERFAMILY ABC transporter transmembrane region 684 1008 IPR036640 GO:0005524|GO:0016020
Vivi1g07640 1269 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1026 1263 IPR003439 GO:0005524
Vivi1g07640 1269 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 369 605 IPR003439 GO:0005524
Vivi1g07640 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1017 1263 IPR027417 -
Vivi1g07640 1269 Pfam ABC transporter transmembrane region 47 319 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g07640 1269 Pfam ABC transporter transmembrane region 705 976 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g07640 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 607 IPR027417 -
Vivi1g07640 1269 FunFam ABC transporter B family member 9 34 364 - -
Vivi1g07640 1269 FunFam ABC transporter B family member 1 684 992 - -
Vivi1g07640 1269 Gene3D ABC transporter type 1, transmembrane domain 94 1000 IPR036640 GO:0005524|GO:0016020
Vivi1g07640 1269 CDD ABC_MTABC3_MDL1_MDL2 1026 1262 - -
Vivi1g07640 1269 PANTHER ABC TRANSPORTER B FAMILY 10 616 IPR039421 -
Vivi1g07640 1269 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524|GO:0016887
Vivi1g07640 1269 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 705 991 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g07640 1269 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1g07640 1269 MobiDBLite consensus disorder prediction 647 676 - -
Vivi1g07640 1269 SUPERFAMILY ABC transporter transmembrane region 34 353 IPR036640 GO:0005524|GO:0016020
Vivi1g07640 1269 ProSitePatterns ABC transporters family signature. 1166 1180 IPR017871 GO:0005524|GO:0016887
Vivi1g07640 1269 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 334 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g07640 1269 Gene3D - 367 636 IPR027417 -
Vivi1g07640 1269 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 330 - -
Vivi1g07640 1269 Gene3D - 1016 1268 IPR027417 -
Vivi1g07640 1269 MobiDBLite consensus disorder prediction 647 662 - -
Vivi1g07640 1269 Pfam ABC transporter 1045 1194 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07640 Vivi-Chr1 203593675 203599296 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07640 30 1265 Calmodulin-binding Proteins AT2G36910 44.880 0.0 1050