Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07632 ATGTTGATACCGCTTTCACTTGTTGACGATGTTGCTCTTTTTGATTTAGAACAACAACATCCTCGTACCCACAACAACAACAACAACATGTTACCTGTCTTTGTTCTCTTTGATTCTCGTACCATGTCTCACTACCACCACCCAACAACACCACCTTCTTCTTCGTCTCACAACCACAACAATCTTCCAACAAGATTAATTTCTCACAACCGCAACAACAGCGTTTCATCAACACCAACCTTCTCTGTGGTTGATGAAACTCTTGTCTATCATTCTCATTTGGCCAACAACATTCCAAGAAGATCAAGGATTCATCCAACAACACGGTCATTTAATCATGCTCATCCCCACCACCACTACAATGGTACTACTAGGGCTTCTGCTGCTGTGGTGATGGATGTTCAAGAACATGTTACAACATCAACAGAAGATGCTGTAGAATCCATCTGCTCCATTTGTCTTGTTGACTTGCCTAATGCTTCTTCCACGCCAATTCGGTTGCGCTGCTCTCATGTTTTTCATACTCACTGCATTCAGAAATGGATTAACATTCGAAAAAACTGTCCTCTCTGTCGCGCCGATGTTTAA 588 0.4218 MLIPLSLVDDVALFDLEQQHPRTHNNNNNMLPVFVLFDSRTMSHYHHPTTPPSSSSHNHNNLPTRLISHNRNNSVSSTPTFSVVDETLVYHSHLANNIPRRSRIHPTTRSFNHAHPHHHYNGTTRASAAVVMDVQEHVTTSTEDAVESICSICLVDLPNASSTPIRLRCSHVFHTHCIQKWINIRKNCPLCRADV 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07632 195 SUPERFAMILY RING/U-box 135 195 - -
Vivi1g07632 195 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Vivi1g07632 195 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 57 195 IPR044675 -
Vivi1g07632 195 Pfam Ring finger domain 150 192 IPR001841 -
Vivi1g07632 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 195 IPR013083 -
Vivi1g07632 195 SMART ring_2 150 191 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07632 Vivi-Chr1 203212832 203213419 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07632 145 195 C3H Transcription Factor Family AT5G47610 37.255 1.34e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07632 - K16281 vvo:131593264 378.252