Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07628 ATGGATGAGAATTTTAACCGAGTGGTTGGTAATGGTGAGAATTCCTTGTTCTGGAGGAATCCGTGGCTGGAGGGAGGGGTGTTGATGGATAAATTTAGGCGGCTTTTTGACTTGCCAGAATATAAGGAAGCATCGCCAACGGAGGTTCAAATGTTAGGTGGGTCTCAGGTTTGGTGGTCGAAAGTGGTCCCTCTCAAGGTAAATATTTGTATTTGGCGTTTATTTTGTAGTAGATTACGGACAAAGGATAATTTGATGCGGCGTAATATTTTGTCGGATGAGAATCAGACTTGTGCTAATGATTGTGGTCAGATTGAGTATAAGGATCATAGTTTTGTTCGGTGTCCGCATTTTAGTGGTGTTTGGCCGATCTTAACAGGGTATAACTATGTCATGGATGAAATTATGGAGGAGAGTGGTGGTGATTTTCCTGCTGCTCATGATTTGGTAGTGGACCACGTCCACGTCGACAAGGGCAAAAGGGCTTCTGAGGAGTTTAAAGTGGGTCGATTTTATAAAATTGATCATTCCAAACTTCCACTGAATTGCCCTGCTCAAATAAAATGTGTGAGCATTGTAATGGTCTGTGACAAAGGGGAGCAACAAGTATCTCTGAGGTATCCAAGCCTCCACTCTCTTAGCACTCATTTCAACGACCAAAGCTTTGGAAAGCCAGGCGGGAAGAAAATCCCCACACTTGACGACAAGTACGTGATGGGAATGGAATTCGCCATCAAAACACTTTGCAGAAGCATCTCAGCTGAGGAATTTGCTCAGAAAAGAAACTCATGGAGCTTCTGGGCCTCTCCCTCTGAAGAAAGCTTTCTAAACCATAACAGTACAGTTATCAATGATGCTGCTTCTAGTTTGGTTTCCAAGCAGGGTCCATGTTGGTCTCAGCTCAAGTTCACGGGTATGGTGCAGTGGGGCCAACGCAGGCAAGTTTGCTTTCTCGGCCGCCATGAGGAACAAAAGGTTGAATCTTTACACCAACTTCATAAGGAAAAAAGGGAAAGGACTTATAAGAAGAGAAAGAACGTTGAAGAAGAAATGGAGGATGTAAAGCTAGCTCCTTTTGGGGTACTGAGGATGACTCGTCAGAGCTTCAAAAATCAACAAGATATGACTAGTAGCAGTGGGGCTAAAAAGTCTAAGAAAGCAGTAAGCGACACTAAGCAGCAGCAACTCGTTGTTTATAGCAAAAAAGGGCGGAAAGTATCAATTGACAGATGGTCTGCTGAGAGGTATAAGATGGCAGAGGAGAATATGTTGAAGGTTATGAAGGAAAGGGAAGCTGTGTATGGAAATCCAATAATGAGGCAAGACTTGAGATCAGAAGCACGAAAGTATATTGGTGACACAGGTTTACTTGATCATTTGCTGAAGCACATGGCTGGGAAAGTGGTACCAGGAGGAGTTGAAAGATTCCGACGACGTCACAATGCTGAAGGTTCAATGGAATACTGGTTAGAGAGTGCGGATCTCGTTGATATCAGAAAAGAAATGGGTGTACAAGATCCTTACTGGACTCCTCCACCTGGATGGAAGCCTGGAGACAGCATTTCACCAGAACATGTTACTAGAAATGAACTCAGGGAGATAAGGGAGGAAATAATCAAGTTGAAACGAGATATGCTGGATCTCAAATCAAAAAAAGAAGAGGAAGCCTTGGCTATTGTGGTTACTTCTAGTCCTTGTTTGTCAAGTGTGAACTATAGGGACTATGATTCCCAGGTCTCTAAGCAGGAGATTTATGCTGAGCTGGTTCATAAAAAGGCTAGAGTTGAAGAACAGCTAAAAGAAATTACTCTAACTTTGAATGACATGGAGGGCCAACTTGGAATGCTGAAGCCCACAATGTCAGAATCATTAACACCACCAGCGTTATTGCTAGGACCAACATCATCATTGACAGAAAACATTGGAGAGGTGACAAGGGAGGTTGAAGAAGGTACTAATGACAAAGGAACAAAATCAGCGGACACACAAATGGTACGAGGCAGCGCAGCAGAGAACAAGGCAGCAAAGATAGAAAGACTGAAAAGTGGTTTTAAAATCTGCAAACCAAGAGGGACCTTTATGTGGCCAAATATGAGTGTGTCTCTTCATGTTGTGGCTAACCTTGATGAACTCACTGTTGTCCCAACCCCAACCTCAGTTTCCTCTTCTGCCACATCAGCTCCCAAGCTTGTCTCCAATACCAAGACTGGGAAATTGCCACTTTCCCCTTCTTCTCCTGTTAAGCCACTAGCAGAGAGGCGCCCTGTGAGCACAGCTACTTTGTCACATGTCACTGGACCCTTTTCCCCTCATCTTTCTCCTCCATTAGAGACCTCAAAATCCACAATCACCAAGAAGGATTCTTGTATTAACCTCAATGAGACTCCTCTGGCCCAAGAGTAG 2403 0.4382 MDENFNRVVGNGENSLFWRNPWLEGGVLMDKFRRLFDLPEYKEASPTEVQMLGGSQVWWSKVVPLKVNICIWRLFCSRLRTKDNLMRRNILSDENQTCANDCGQIEYKDHSFVRCPHFSGVWPILTGYNYVMDEIMEESGGDFPAAHDLVVDHVHVDKGKRASEEFKVGRFYKIDHSKLPLNCPAQIKCVSIVMVCDKGEQQVSLRYPSLHSLSTHFNDQSFGKPGGKKIPTLDDKYVMGMEFAIKTLCRSISAEEFAQKRNSWSFWASPSEESFLNHNSTVINDAASSLVSKQGPCWSQLKFTGMVQWGQRRQVCFLGRHEEQKVESLHQLHKEKRERTYKKRKNVEEEMEDVKLAPFGVLRMTRQSFKNQQDMTSSSGAKKSKKAVSDTKQQQLVVYSKKGRKVSIDRWSAERYKMAEENMLKVMKEREAVYGNPIMRQDLRSEARKYIGDTGLLDHLLKHMAGKVVPGGVERFRRRHNAEGSMEYWLESADLVDIRKEMGVQDPYWTPPPGWKPGDSISPEHVTRNELREIREEIIKLKRDMLDLKSKKEEEALAIVVTSSPCLSSVNYRDYDSQVSKQEIYAELVHKKARVEEQLKEITLTLNDMEGQLGMLKPTMSESLTPPALLLGPTSSLTENIGEVTREVEEGTNDKGTKSADTQMVRGSAAENKAAKIERLKSGFKICKPRGTFMWPNMSVSLHVVANLDELTVVPTPTSVSSSATSAPKLVSNTKTGKLPLSPSSPVKPLAERRPVSTATLSHVTGPFSPHLSPPLETSKSTITKKDSCINLNETPLAQE 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07628 800 PANTHER PROTEIN DYAD 164 782 IPR044221 GO:0007131|GO:0051177|GO:0051321
Vivi1g07628 800 Coils Coil 585 612 - -
Vivi1g07628 800 MobiDBLite consensus disorder prediction 647 670 - -
Vivi1g07628 800 Pfam zinc-binding in reverse transcriptase 56 122 IPR026960 -
Vivi1g07628 800 MobiDBLite consensus disorder prediction 370 393 - -
Vivi1g07628 800 MobiDBLite consensus disorder prediction 716 741 - -
Vivi1g07628 800 Coils Coil 524 551 - -
Vivi1g07628 800 MobiDBLite consensus disorder prediction 716 783 - -
Vivi1g07628 800 Coils Coil 330 357 - -
Vivi1g07628 800 MobiDBLite consensus disorder prediction 758 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07628 Vivi-Chr1 203151482 203158165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07628 344 491 PHD Transcription Factor Family AT5G22260 29.697 5.06e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07628 - - vvo:131593274 1554.65