Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07623 ATGAGACTCTCTTCAGCTGGTTTTAGTCCTCCACCACCCCAAGAAGGGGAAAAGAGAGTTTTAGATTCAGAACTTTGGCATGCATGTGCTGGCCCTCTTGTCTCTTTGCCAGCAATTGGAAGTAGAGTTGTGTACTTTCCACAAGGTCACAGTGAACAAGTGGCTGTGTCAACCAACAAGGAAGTGGATGCCCATATTCCAAACTATCCAAGCTTACCTCCTCAGCTTGTTTGTCAACTTCATAATTTGACTATGCATGCTGATGTGGAGACAGATGAAGTGTATGCGCAGATGACTCTGCAACCTCTGAATGCTCAAGAGCAAAAAGAGGCTTACCTTCCAGCTGAGTTGGGCACTCCGAGCAAACAGCCAACAAACTACTTCTGCAAGACCTTGACTGCTAGTGACACAAGCACTCACGGTGGATTCTCTGTTCCTCGCCGTGCGGCTGAAAAAGTGTTTCCTCCATTGGACTTTTCCCAACAGCCTCCTGCTCAGGAGTTAATAGCAAGGGATTTGCATGGCAATGAATGGAAATTCAGACATATATTCCGGGGACAGCCGAAAAGGCATCTACTTACAACAGGATGGAGTGTTTTTGTGAGTGCTAAAAGACTTGTTGCTGGGGATTCTGTGCTGTTTATCTGGAATGAAAAGAACCAACTGCTTCTTGGCATACGCCGTGCTAGCCGACCACAAACTGTGATGCCTTCATCGGTGTTGTCAAGTGATAGTATGCACTTGGGACTTCTCGCTGCAGCAGCGCATGCGGCTGCAACCAATAGTCGCTTCACTATTTTCTATAACCCACGTGCTTGCCCATCAGAATTTGTCATACCCTTAGCGAAGTATGTTAAAGCCGTGTATCATACTCGAGTTTCAGTTGGTATGCGATTCAGGATGCTGTTTGAAACAGAGGAGTCTAGTGTGCGACGGTACATGGGTACAATTACTGGCATCAGTGACTTGGATTCTGCCCGGTGGCCAAACTCACATTGGCGCTCGGTAAAGGTTGGATGGGATGAATCCACTGCCGGAGAAAGGCAACCGAGAGTATCTTTGTGGGAAATTGAACCATTAACAACATTTCCTATGTATCCATCTCCATTTCCCCTTAGGCTTAAACGACCATGGCCTTCTGGTTTGCCTTCATTCCATGGCATGAAAGATGACGATTTTGGCATGAATTCTCCTTTGTTGTGGCTTCGAGACAATGATAGAGGGCTTCAATCTCTTAATTTTCAAGGTATTGGGGTTAACCCTTGGATGCAGCCGAGATTTGACCCTTCCATGCTGAATATGCAAACCGATATGTATCAAGCTGTGGCTGCTGCTGCGCTTCAAGACATGAGGAGTGTCGATCCTACCAAACAGCATCCTGGTTCCTTACTTCAATTTCAACAACCGTCAAACTTCCCAAACAGGACTGCTGCTTTAATGCAGGCACAGATGTTACAACAGTCACAATCTCAACAGGCTTTTCAAAATAATCAGGACAATCAGAATATATCTCAACCTCAGCAACAAACTCAGACTCATACTCATACTCAACAGCATCTGCAGCACCAGCACTCATTCAATAATCAGCTCCATCATCAAAATCACCAGCAGCAACAACAACAACAACAAACTCAACAGCAAGTGGTGGATAATCAGCATATTTCTGGTTCGATCTCTACAATGTCACAGTTTATGTCAGCGCCCCAACCGCAGTCACCACCACCTATGCAAGCTCTTCCTTCACTATGTCATCAACAGAGTTTTTCTGATTCAAATGTAAACTCTTCAACTACTATTGTTTCTCCTTTGCACAGTATCATGGGTTCGTTTCCGCAGGATGAAACATCCCATCTTCTAAGTCTTCCTAGAACAAATTCTTGGGTTCCTGTCCAAAATTCAACCGGTTGGCCCTCGAAGCGTGTTGCGGTGGATCCACTCCTTTCTTCAGGAGCTTCTCAATGTAGTATGCCCCAGGTGGAGCAGGTAGGGCAGCCGCAGAATAGCATATCTCAAAATGCTATTACGTTGCCACCGTTTCCTGGGAGGGAATGCTCAATAGACCAGGAAGGGAACAATGATATGCAAAGTAATCTTTTATTTGGTGTCAATATCGATCCCTCGTCTCTTCTAATGCATAATAGGATTTCAAACTTTAAGGGGATTAATGGAAACATCAGTGACTCCTCAACCATGCCCTATCATCATCAATCTTCTAATTACATGAACACCGCAGGCACCAATTCTTCATTGAATCATGGAGTAACGCCTAGTGTTGGTGAATCTGGTTTCTTGCAAAACCTTGAAAATGGGGAGCAAGAAAACAACCCACTGAACAAGACCTTTGTGAAGGTTTATAAAGCAGGGTCCTTCGGAAGATCATTGGACATCACTAAGTTCAGCAGCTACCATGAGCTGCGTAGTGAGCTCGCCCGAATGTTTGGACTAGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCTTGGCCGGAATTTGTGAATAGTGTATGGTGCATCAAGATACTATCGCCCGAGGAAGTGCAGCAAATGGGCAACACTGGCCTCGGGCTTTTAAACTCGGTTCCCATTCAAAGGCTTTCAAATAGCATCTGCGATGACTATGTGAGCCGTCAAGATCAAAGAAATCTAAGCAGTGGAATAACAACCGTTGGATCTCTAGACTACTGA 2739 0.4545 MRLSSAGFSPPPPQEGEKRVLDSELWHACAGPLVSLPAIGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLVCQLHNLTMHADVETDEVYAQMTLQPLNAQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSGLPSFHGMKDDDFGMNSPLLWLRDNDRGLQSLNFQGIGVNPWMQPRFDPSMLNMQTDMYQAVAAAALQDMRSVDPTKQHPGSLLQFQQPSNFPNRTAALMQAQMLQQSQSQQAFQNNQDNQNISQPQQQTQTHTHTQQHLQHQHSFNNQLHHQNHQQQQQQQQTQQQVVDNQHISGSISTMSQFMSAPQPQSPPPMQALPSLCHQQSFSDSNVNSSTTIVSPLHSIMGSFPQDETSHLLSLPRTNSWVPVQNSTGWPSKRVAVDPLLSSGASQCSMPQVEQVGQPQNSISQNAITLPPFPGRECSIDQEGNNDMQSNLLFGVNIDPSSLLMHNRISNFKGINGNISDSSTMPYHHQSSNYMNTAGTNSSLNHGVTPSVGESGFLQNLENGEQENNPLNKTFVKVYKAGSFGRSLDITKFSSYHELRSELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQQMGNTGLGLLNSVPIQRLSNSICDDYVSRQDQRNLSSGITTVGSLDY 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07623 912 ProSiteProfiles PB1 domain profile. 779 863 IPR000270 GO:0005515
Vivi1g07623 912 SMART B3_2 128 230 IPR003340 GO:0003677
Vivi1g07623 912 FunFam Auxin response factor 126 230 - -
Vivi1g07623 912 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Vivi1g07623 912 Pfam AUX/IAA family 771 864 IPR033389 -
Vivi1g07623 912 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 868 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi1g07623 912 FunFam Auxin response factor 774 868 - -
Vivi1g07623 912 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Vivi1g07623 912 CDD B3_DNA 127 228 IPR003340 GO:0003677
Vivi1g07623 912 Gene3D - 776 868 - -
Vivi1g07623 912 Gene3D - 126 229 IPR015300 -
Vivi1g07623 912 SUPERFAMILY DNA-binding pseudobarrel domain 113 257 IPR015300 -
Vivi1g07623 912 MobiDBLite consensus disorder prediction 483 550 - -
Vivi1g07623 912 SUPERFAMILY CAD & PB1 domains 778 854 - -
Vivi1g07623 912 Gene3D - 292 364 - -
Vivi1g07623 912 Coils Coil 527 547 - -
Vivi1g07623 912 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi1g07623 912 FunFam Auxin response factor 292 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07623 Vivi-Chr1 202945576 202951034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07623 1 484 B3 DNA Binding Superfamily AT1G30330 86.270 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi1g07623 AUX_IAA 3.3e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07623 - - gmx:100798719 1459.51