Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07621 ATGGGCTTTCTTGTCAAACAAGTCCAAGAAGTAAGAGAGCGACTAGAATTAGGGTTTATCAGCGCCACTTTTCTACTTTCTACAGCTTACATCACATTTCCTTCCTTCCCTTTGCTCTCACCGTCGCTTGGAACTATGCCTAAGCAAATCAACGAGATTAAGGATTTCCTTCTCACTGCCAGAAGGAAGGATGCTAGGTCAGTGAGAATCAAGAGGAGCAAGGATGTCGTTAAGTTCAAGGTCAGATGTTCCAAGTACCTCTACACACTCTGTGTGTTTGATGTTGAGAAAGCCGACAAGTTGAAGCAATCACTTCCTCCAGGTTTGAGTGTTCAAGACCTTTAA 345 0.4348 MGFLVKQVQEVRERLELGFISATFLLSTAYITFPSFPLLSPSLGTMPKQINEIKDFLLTARRKDARSVRIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSLPPGLSVQDL 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07621 114 FunFam 60S ribosomal protein L38 46 114 - -
Vivi1g07621 114 Pfam Ribosomal L38e protein family 47 113 IPR002675 GO:0003735|GO:0005840|GO:0006412
Vivi1g07621 114 Gene3D - 46 114 IPR038464 -
Vivi1g07621 114 PANTHER 60S RIBOSOMAL PROTEIN L38 46 113 IPR002675 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07621 Vivi-Chr1 202785700 202787148 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07621 46 114 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 92.754 1.58e-42 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07621 K02923 - egt:105955349 140.198