Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07563 ATGTTACAAGATTCTATATTTTTCTCATATAATGGTACTAAAGATTTTTGGGATGATTCTGAATCAGAGAGATTGGTTTCAAGGTTTGTGAGTAACGATAATATGTCTGGTTCTTCTTGTTCTAAGAAGGTGAGTGGAATGAATTCTGGTTATGGTGGTGCTGGTGGATTGCCACCTCACTATCCTAGACACGGTTCTTCTGCTACTTTAAGTTCTGCTATGGATGCTTCTTTTGAATTGGCTGGTTCATTGGGAATGAATCATGAAACATCTCATAGGAGCTTTGGTTCAAATCTTCTCAGGCAGGGTAGTTCCCCTGCTGGACTTTTCTCCAACATTTCATTTCACGATGGGTTTGCTGCCATGAAGGGTGTTGGAAACTATGCAGCCATGAATGGAAGTAATGGTGAAGTTAGTCCGTCTATTAACCCATTGAATAGTCAAGTTAGCTTCCCTTCAAGAAACACTTTTTCGTTGGGAATGTTATCACACATCTCTGAAATAGATAGCGAGGATATTGAAGCAACTAGCCCTGACGACGGAGGCAGCAATGGTGATACTATGCATTATGGTTTGGGATTTACCTATAGTTCATGGAATGATACTCAATCATTCTCAGAAAATCTCAGTGGCTTAAAAAGAGGGCGAAGTGGTAACGAGAAAATGTTTGCTGATTTTCAGAGTGGAGGACTAGGAAATCAAGTTCATACATTATCACATCACTTGAGTTTACCGAAGACTTCATCCGAGATGATTGCAATGGAGAAGTTGTTTCAGTTTCCGGATTCCGTTCCTTGTAAAATCAGAGCGAAACGAGGTTGCGCTACACATCCTCGAAGCATTGCGGAAAGGGTAAGAAGAACTAGGATCAGTGAAAGAATGAGGAAATTACAAGAGCTTGTTCCAAACATGGACAAGCAAACTAACACATCAGACATGCTGGACTTGGCCGTTGATTACATTAAAGAACTTCAAAAACAATTCAAGTTTCTAAGAGATAAACGAGCAAACTGCAAATGTACGAGGATGCAGAAGGCAGATACAAATCAAATTCCTTGA 1059 0.4004 MLQDSIFFSYNGTKDFWDDSESERLVSRFVSNDNMSGSSCSKKVSGMNSGYGGAGGLPPHYPRHGSSATLSSAMDASFELAGSLGMNHETSHRSFGSNLLRQGSSPAGLFSNISFHDGFAAMKGVGNYAAMNGSNGEVSPSINPLNSQVSFPSRNTFSLGMLSHISEIDSEDIEATSPDDGGSNGDTMHYGLGFTYSSWNDTQSFSENLSGLKRGRSGNEKMFADFQSGGLGNQVHTLSHHLSLPKTSSEMIAMEKLFQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKELQKQFKFLRDKRANCKCTRMQKADTNQIP 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07563 352 Gene3D - 275 348 IPR036638 GO:0046983
Vivi1g07563 352 SMART finulus 280 330 IPR011598 GO:0046983
Vivi1g07563 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 277 339 IPR036638 GO:0046983
Vivi1g07563 352 FunFam Transcription factor bHLH130 family 275 344 - -
Vivi1g07563 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 274 324 IPR011598 GO:0046983
Vivi1g07563 352 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 77 346 - -
Vivi1g07563 352 Pfam Helix-loop-helix DNA-binding domain 279 325 IPR011598 GO:0046983
Vivi1g07563 352 Coils Coil 321 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07563 Vivi-Chr1 198970093 198972993 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07563 16 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 48.837 3.39e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g07563 HLH 6.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07563 - - gmx:100819605 463.381