Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07562 ATGTTACAAGATTCTATATTTTTCTCATATAATGGTGAGCCTTTTCATCTTTTTACAGTAATGGATTCCAATACCCAACAGAACCAACAACCCAATTCTGGGTTGCTTCGTTTTCGTTCTGCACCAAGTTCACTATTTTCAAATCTCACACCTTCTTCTTCTGTTGATGATATTAAAGGTACTAAAGATTTTTGGGATGATTCTGAATCAGAGAGATTGGTTTCAAGGTTTGTGAGTAACGATAATATGTCTGGTTCTTCTTGTTCTAAGAAGGTGAGTGGAATGAATTCTGGTTATGGTGGTGCTGGTGGATTGCCACCTCACTATCCTAGACACGGTTCTTCTGCTACTTTAAGTTCTGCTATGGATGCTTCTTTTGAATTGGCTGGTTCATTGGGAATGAATCATGAAACATCTCATAGGAGCTTTGGTTCAAATCTTCTCAGGCAGGGTAGTTCCCCTGCTGGACTTTTCTCCAACATTTCATTTCACGATGGGTTTGCTGCCATGAAGGGTGTTGGAAACTATGCAGCCATGAATGGAAGTAATGGTGAAGTTAGTCCGTCTATTAACCCATTGAATAGTCAAGTTAGCTTCCCTTCAAGAAACACTTTTTCGTTGGGAATGTTATCACACATCTCTGAAATAGATAGCGAGGATATTGAAGCAACTAGCCCTGACGACGGAGGCAGCAATGGTGATACTATGCATTATGGTTTGGGATTTACCTATAGTTCATGGAATGATACTCAATCATTCTCAGAAAATCTCAGTGGCTTAAAAAGAGGGCGAAGTGGTAACGAGAAAATGTTTGCTGATTTTCAGAGTGGAGGACTAGGAAATCAAGTTCATACATTATCACATCACTTGAGTTTACCGAAGACTTCATCCGAGATGATTGCAATGGAGAAGTTGTTTCAGTTTCCGGATTCCGTTCCTTGTAAAATCAGAGCGAAACGAGGTTGCGCTACACATCCTCGAAGCATTGCGGAAAGGGTAAGAAGAACTAGGATCAGTGAAAGAATGAGGAAATTACAAGAGCTTGTTCCAAACATGGACAAGCAAACTAACACATCAGACATGCTGGACTTGGCCGTTGATTACATTAAAGAACTTCAAAAACAATTCAAGTTTCTAAGAGATAAACGAGCAAACTGCAAATGTACGAGGATGCAGAAGGCAGATACAAATCAAATTCCTTGA 1203 0.3982 MLQDSIFFSYNGEPFHLFTVMDSNTQQNQQPNSGLLRFRSAPSSLFSNLTPSSSVDDIKGTKDFWDDSESERLVSRFVSNDNMSGSSCSKKVSGMNSGYGGAGGLPPHYPRHGSSATLSSAMDASFELAGSLGMNHETSHRSFGSNLLRQGSSPAGLFSNISFHDGFAAMKGVGNYAAMNGSNGEVSPSINPLNSQVSFPSRNTFSLGMLSHISEIDSEDIEATSPDDGGSNGDTMHYGLGFTYSSWNDTQSFSENLSGLKRGRSGNEKMFADFQSGGLGNQVHTLSHHLSLPKTSSEMIAMEKLFQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKELQKQFKFLRDKRANCKCTRMQKADTNQIP 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07562 400 Pfam Helix-loop-helix DNA-binding domain 327 373 IPR011598 GO:0046983
Vivi1g07562 400 Coils Coil 369 389 - -
Vivi1g07562 400 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 39 394 - -
Vivi1g07562 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 322 372 IPR011598 GO:0046983
Vivi1g07562 400 FunFam Transcription factor bHLH130 family 323 392 - -
Vivi1g07562 400 Gene3D - 323 396 IPR036638 GO:0046983
Vivi1g07562 400 SMART finulus 328 378 IPR011598 GO:0046983
Vivi1g07562 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 325 387 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07562 Vivi-Chr1 198970092 198972993 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07562 21 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 48.705 1.02e-90 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g07562 HLH 8.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07562 - - gmx:100819605 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g07562 1 198970092 198972993 Vivi1g07562 1 198970092 198972993 ECH
Vivi6g04538 6 147241749 147245074 Vivi1g07562 1 198970092 198972993 PCT