Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07512 ATGAGTTCTGGTTTTGTACCTTCTCCCTCTTCACCATCACAACCTAACTCATCAACTGAGTTCATTGATGGCTTAAAGTTTGGTAAAAAAATCTACTTTGAAGATGCAGCACCTCAAACCAAACCTAATGGTGGTTCATCTTCATCTATGGGGATGATGATGAAGAAGGGAACTCAACCACCTAGGTGTCAAGTTGAAGGTTGTAAAGTAGATCTGAGTGGTACTAAGGCTTATTATTCTAGACATAAAGTTTGTTGCATGCATTCAAAATCTCCTTCTGTGGTTGTTTCTGGTTTGGATCAGAGGTTTTGCCAACAGTGTAGCAGATTTCATCAGCTACCTGAATTCGATCAAGGAAAACGAAGTTGCCGCAGGCGACTAGCTGGCCATAATGAAAGGCGAAGAAAACCTCAACCGAGCTCCGTGTTTACCTCGCACTTTCCCAGACTCTCTCCACCTACTTTTGATAGCAATGTCAAATGTGACAACTTTCTGATGGAATGTGCTTCATACCAGAACAACTCATTGCTAACTCCAAGATCATCTGAGCCGGTTCGCACCAATCAAACAACACCATTTACATGGCAAAACAACTCATCGATGCCGCCATCCGAGTTTTTTCAGCAATCACCAAACTTCCATGGTGCTAGACATTCTCCAATGGAAAACTACAATGAAGTCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAACCAAACATGGTATTCTGGAAACACAACAGCACCAAGTGTGGAGATGAACAACCTGTTGAATTTCAACGGTTCTTCACTCATGACACAATCTTCTCAAGGTGCAGCCAGTTTTCAACTTCCAAATGCTTCTGGGTTTTTAAAGGGCGTCGATACTCGTAACTGTTTGTCGCCTGATGATGTTCCCGATCTCGGTCTCGGACAAAATTCGCAGAGTATGAATAGCGATCTTCATGGCGAGCTTGATGTGCCACAAGGCAAGAGGCAATATTACTGGTCACTTTAA 999 0.4294 MSSGFVPSPSSPSQPNSSTEFIDGLKFGKKIYFEDAAPQTKPNGGSSSSMGMMMKKGTQPPRCQVEGCKVDLSGTKAYYSRHKVCCMHSKSPSVVVSGLDQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPQPSSVFTSHFPRLSPPTFDSNVKCDNFLMECASYQNNSLLTPRSSEPVRTNQTTPFTWQNNSSMPPSEFFQQSPNFHGARHSPMENYNEVTDSSCALSLLSNQTWYSGNTTAPSVEMNNLLNFNGSSLMTQSSQGAASFQLPNASGFLKGVDTRNCLSPDDVPDLGLGQNSQSMNSDLHGELDVPQGKRQYYWSL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07512 332 ProSiteProfiles Zinc finger SBP-type profile. 60 137 IPR004333 GO:0003677
Vivi1g07512 332 MobiDBLite consensus disorder prediction 129 148 - -
Vivi1g07512 332 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1g07512 332 SUPERFAMILY SBT domain 61 142 IPR036893 GO:0003677|GO:0005634
Vivi1g07512 332 FunFam Squamosa promoter-binding-like protein 14 54 124 - -
Vivi1g07512 332 Gene3D - 54 124 IPR036893 GO:0003677|GO:0005634
Vivi1g07512 332 MobiDBLite consensus disorder prediction 36 60 - -
Vivi1g07512 332 Pfam SBP domain 63 136 IPR004333 GO:0003677
Vivi1g07512 332 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 23 311 IPR044817 GO:0003677
Vivi1g07512 332 MobiDBLite consensus disorder prediction 302 316 - -
Vivi1g07512 332 MobiDBLite consensus disorder prediction 40 54 - -
Vivi1g07512 332 MobiDBLite consensus disorder prediction 298 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07512 Vivi-Chr1 194758176 194760175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07512 25 268 SBP-box Gene Family AT3G57920 45.174 3.56e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi1g07512 SBP 8.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07512 - - gmx:100807165 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g07512 1 194758176 194760175 Vivi1g07512 1 194758176 194760175 ECH
Vivi6g04565 6 147563123 147566708 Vivi1g07512 1 194758176 194760175 PCT