Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07508 ATGAATGAGAATAAGATTGATTATTTAGGAAGGATCCAACAAAACCATATACAAAATGGTGATTGTTCAAGTCAATATTTTGATATGAGAAATGCTTCAAATATTGGAAATTTTAGTCAACCATTTTCAATGGAACAATCATCATCTAGCACAATTATAAGCCGTTTTGAGTCGCCAAATTCAGCTTTTTATGCAACAGAAATTTGCATGGGATTTCCAACACATGATTTGGAGTTTCCTTTGTATCAATGTCCAAGGGAAAATATTTTCATAGATTCTTCAACAAACCAAACTAGCAATAACTTTGATTTGTCAAATTTTAACACTTTGCAACCATTGGTTAGATCTCAATTGAATACTGATGATCAATGTTGTAGATCTCCTCAGAAATCCAATGGAAATTTTCAACATAAACTCTTCATTGATAACGCGGCGTCAATTAGTATGAGTCCATTAATTCATTCTAATGGAAATCAGGAGCATAAAGTTTCATGTGGTTCATATGATTTCCCGGTTTCTCAGTTGAATTTCTCTTATCAGCAAGAGAAAGTTTCTCAAACAATGTCTACAGGAAATGTCTCAACAACTTCAGGAAACCCTTGTGGATCATCGGTCTCGAGTAAAACAAGAATAAGATGGACTCAAGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGTCTTGGAGGTGCTGAAAAGGCGACCCCAAAAGCTATATTAAGGCTGATGGAATCAGATGGATTGACAATCTTCCATGTTAAAAGTCACCTGCAGAAATATAGAATTGCGAAATACATGCCAGAACCTGCTCAAGGGAAATGTGAGAAAAGAACTCATGTAGAGAATGTGCATCTCGATGTCAAATCTGGCTTGCAAATAAGAGAGGCGCTTCAGCTTCAACTCGATGTTCAGAGGCGTCTTCACGAACAACTTGAGATTCAGCGAAAATTACAGTTGCGAATCGAGGAACAAGGAAAGCAGCTGAAGATGATGTTTGACCAACAGCAGAAGACAAATACTTGCCAACTGAATAATCAGAGTTTGGATAATACATCAAATAATGATACACAAATTAGTCCTAAGGATATTGAGGTTTCTATTTTTGAAGGGTCTGAAAATTCATTATTCTCTTCAAAGATAAGTTAG 1146 0.3578 MNENKIDYLGRIQQNHIQNGDCSSQYFDMRNASNIGNFSQPFSMEQSSSSTIISRFESPNSAFYATEICMGFPTHDLEFPLYQCPRENIFIDSSTNQTSNNFDLSNFNTLQPLVRSQLNTDDQCCRSPQKSNGNFQHKLFIDNAASISMSPLIHSNGNQEHKVSCGSYDFPVSQLNFSYQQEKVSQTMSTGNVSTTSGNPCGSSVSSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRIAKYMPEPAQGKCEKRTHVENVHLDVKSGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTNTCQLNNQSLDNTSNNDTQISPKDIEVSIFEGSENSLFSSKIS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07508 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 186 359 IPR044848 GO:0003700
Vivi1g07508 381 Pfam MYB-CC type transfactor, LHEQLE motif 291 338 IPR025756 -
Vivi1g07508 381 Coils Coil 294 314 - -
Vivi1g07508 381 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
Vivi1g07508 381 Gene3D - 207 266 - -
Vivi1g07508 381 SUPERFAMILY Homeodomain-like 206 262 IPR009057 -
Vivi1g07508 381 Pfam Myb-like DNA-binding domain 212 261 IPR001005 -
Vivi1g07508 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 265 IPR017930 -
Vivi1g07508 381 FunFam Myb family transcription factor 207 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07508 Vivi-Chr1 194420474 194422350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07508 193 335 G2-like Transcription Factor Family AT4G28610 60.274 1.77e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi1g07508 Myb_DNA-binding 1.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07508 - - psat:127092497 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g07508 1 194420474 194422350 Vivi1g07508 1 194420474 194422350 ECH