Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07489 ATGGCGTCTAAAGGTCAAAGGTCTAAGGTTGATCATGATTATAAAGCTAAACGGCCGAAGGCTCTTGAAGCTCCAAAGGATCCTAGACGACCCAAAACTCATTGGGACCATGTTTTAGAAGAGATGGTGTGGCTGTCAAAGGACTTCGAGTCAGAAAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTTCTTTAAAAGCCAGCAAAGGCATGTTAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAGCGGTTAAGAAAAGTTGCACTAAATATTTCTAAGGATGTTAAGAAATTTTGGACAAAAATAGAAAAACTGGTTCTTTACAAGCATCAAATGGAACTCGAGGTGAAGAAAAAAAAGGCACGTGACAAACAGCTTGAGTTTCTTTTAGGTCAAACTGAGAGATACTCAACTATGTTGGCCGAGAATCTCGTGGATACTCATACACCAGCAGGGAAAATTTCTGCAGAGCATCACACAGGTATTCAATGCAAAGATATAGATGGAGACATCATCAATGAACCTCTGGAAGCTAATGTTGAGTATCAGTCCATCACACCTGATAATGATGAAGAATATGATGTACAATCTGATGATGTATCGGATGATGATGAGCAAACCCTCGAAGAAGATGAGGCTCTTATAACTAAAGAAGAAAGGCAAGAGGAATTGGCAGCTTTGCAGAATGAAATGGATCTTCCAATTGAGGAGTTACTCAAACGTTATGCTGGAGATAAAGGAGAATTGACAAGGCATGAAAGTAGTCCAGATCGTAGTGAAGATGGTGAAAAAATAGTTAGAACTGATGGTGTTGATGGTCAGGAAGAACCAGTATTGGAAAATGGAGATCATATATCTATAAGCAAAATAAGTACAAGCAACTCCGGCACGGTCCCTGGTCGACGTTGTGATGACAATAATGGTGATGTAGCTACACCAACAAACAATCTATCTCAAAATGAGGATCATCAATTTGGAAGTTGTAAAGAGGTTTCCATTGAGGCAGCCAATGAAAATGTTCCATTTGATTTTTCTGATGAAGAGGAAGATGGCGACTTTTTGTTTGGCACAGAGGATAAGGATGATGAAACAACCTTATCTGAGGAAGAAAAACTGGACAGAGTTGATACAATTGATCCAAAAGATGAGATTGCATTACTACAAAAAGAGAGTAACATGTCGGTTGAGGAACTACTTGCAAGGTATAAAAAGGACCTGAGTGATGATGGGGATCAGGAAGATGAGTCTGATTATGAGTCTGCTTCATCAGAAGGCCATCAGAATTCACCGGTCCATGTTGATGAGGATGCTGAGCAGAAAGTTCATACTGTTTCTGTTGGTGAAGATATGAAGTCTGGCGAGCAACTGGCTGCCGTACAGACCCAGGCAGAAGTACAGGGGGAAGGACCTTGTGAAAATTCAGAGGAAAGAGAAAGTGACGATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACGACTAAAGTGCGTACAAAATCCCCCTTTCTACTCAAGTACACTCTTCGTGAATATCAACATATTGGATTGGATTGGCTCGTAACAATGTATGAAAAAAAGCTGAATGGAATTCTGGCAGATGAAATGGGGCTTGGAAAAACGATAATGACTATAGCTTTGCTTGCACATCTTGCCTGTGAAAAGGGGATTTGGGGTCCACATCTAATTGTAGTGCCAACTAGTGTGATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCGTTTAAAATTTTGACCTATTTTGGAAGCGCAAAGGAGCGGAAACATAAAAGACAAGGATGGTTAAAACCAAACTCATTTCACGTATGCATAACAACATATAGATTAGTTATTCAGGATTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCACCTCATTAAAAACTGGAAATCACAAAGGTGGCAGACACTGTTGAATTTCAATTCAAAACGACGAATTCTGTTGACTGGTACACCGCTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTCCAGTCACACCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGAATGGTAGAGGGAGAGGAAAAAGTTAATAAGGAGGTTGTTGATCGCCTGCATAATGTCCTTCGTCCATTCTTACTCCGTCGATTAAAGAGAGATGTAGAAAAGCAACTTCCCATGAAAATTGAGCATGTCATATACTGTAGGCTGTCAAAGAGGCAGAGGAATTTGTACGAGGATTTTATTGCTAGCTCAGAGACTCAAGCTACTCTTGCAAATGCCAATTTTTTTGGGATGATCAGTATTATCATGCAACTTCGCAAAGTTTGTAATCATCCTGACCTATTTGAGGGTCGTCCAATCGTCAGTTCTTTTGATATGTGTGGGATTGATATTCAGTTAAGTTCTTCTATTTGCTCCATGCTTTTGCCTAGCTCCTTTTCAACAGTTGACTTAGAAGGTTTGGGGCTTTTATTTACTCATCTTGACTATAGCATGACTTCTTGGGAGAGTGATGAAGTGCAATCTATTGAGACCCCTGCAACTTTAATTATGGAACGCACTGATATGGCTGATCTGGAAGTAACTAAGCCTGGACTGAAGTGTCAGAAAAGGCAGCAAGGAACGAACATTTTCGAAGAGATTCGAAAAGCAATTTGGGAAGAGAGAATATCACAGGCCAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAAACGACCCATCTACTCAACCACTCTAAGGGAGCTTGTTACCATAAGGCATCCTGTATATGATATTTATCAAAAGAAGGCAAATCCTGTTTCATACTTGTTCCCATCAAAACTGGCTGACATTGTTCTCTCCCCAGTTGAACGATTTCAAAGGACTATTGATGTGGTTGAAAGTTTCATGTTTGCCATTCCTGCCGCCCGAGCTTCCCCTCCTGTTTGCTGGTGCAGTAAAAGGGAGACAACTGTGTTTCTGAACCCATCTTACAAGCAGCGATGCTCTGATATTCTGTCACCACTGTTGTCACCAATCAGGCCCGCAATTGTCCGTCGTCAAGTATATTTCCCAGATAGGCGACTTATACAATTCGACTGTGGAAAATTACAGGAGCTAGCAACTTTGCTGAGGAGATTAAAATCAGAAGGTCACCGAGCTCTGATATTCACTCAGATGACTAAGATGCTTGACATATTAGAAGCGTTCATTAATTTGTATGGTTATACTTACATGCGCTTAGATGGATCAACGCAGCCAGAGGAGAGGCAGACCTTAATGCAGCGTTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACTCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCTCAAGATCGGTGCCACAGAATTGGTCAGACACGTGAAGTGCATATATATCGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAAGCAAAAGCGCGCACTTGATGATTTGGTTATACAAAGTGGGGCTTATAATACTGAGTTCTTCAAAAAGCTTGATCCGATGGAACTATTTTCAGGTCATAGAACACTTTCAATTAAAGACACGCCGAAGGAGAAAAGCCAGAACAGGGGAGAAGTTTCTGTTACCAATGCAGATGTGGAGGCTGCATTAAAACATGTAGAAGATGAGGCAGATTATATGGCGCTGAAGAAAGTTGAACTGGAAGAAGCCGTGGATAATCAGGAATTTACAGAAGAAGCCAGTGGGAGACTTGAAGAGGATGAATATGCAAATGAGGATGATGAGCCCCAAGAATTAGGCGAATCTGTTTCCAATTTGAATAAAGAGGATGCATTAATGTTAAATGGAGGTGATCCTAAGGAAGATAAACCGCCCTCTGTTGTTGCCAAAGAAGATGATGTTGACATGCTGGCAGATGTGAACCAGATGGCAGAAGCTGCAGCTGCAGCTGGGCAGGCGTTATCAGCATTTGAGAGTGCGCTACATCCTATTGACCGATATGCCATTCGTTTTCTAGAGCTGTGGGATCCAATTATAGATAAAGCAGCCTTGGAATCTGAAGTCAGGATTGAGGATACTGAATGGGAATTGGATCGCATTGAAAGGTATAAGGAGGAGATGGAAGCCGAAATTGACGAAGATGAGGAGCCTCTTGTATATGAAAGCTGGGATGCAGATTTTGCAACAACAGCTTATCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAAGAACTTGAATATGAAGCTAAACTGAAAGAGGAAGCTGAAGAAGAGAAAAAGACTCAAACACCAAATGATTCCAAGCTCAAGCCTAAAAAGAAACCCAAGAAAGCAAAGTTCAAATCTCTGAAAAAAGGATCTTTAACCTCTAGCTCAAGAACTGTGAAAGATGAGCTACGAGCAGTGCCAATGGCCATAGATGATGATGCTGCCACTAGTCTTGATCTTGTGACTCCAAGTTCAAGTAGACATAAAAAACGCAAGAAGTCTAAATTAATAACTGATGGTGAAGAAGAAAAGAGATTTAAGAAGTCCAAAAAGTACAAGAGGGATTCTCTTGACAATTATGATTCAGATTTAGAATCCAATTCAATAGATATGCAGGATGAACATGCAGAATCAGATCCATGTAAAAGTCTGGTTGTGTTGGAACAGAAAACAGTTGGCAGGAGTAAGATGGGAGGAAAAATATCCATCACTCCAATGCCTGTGAAACGGGTCTTTATGATAAAAGCCGAAAAATTGAAGAAGGGAAATATTTGGTACAGAGATTGTATTCCATCAGCTGATTTTTGGCTGCCTCAGGAGGATGCAATATTATGTGCAGTTGTTCATGAGTATGGTCCTAACTGGAGCTTTGTTAGTGAAATGCTTTATGGAATGACTGCTGGTGGGGCATATAGGGGGAGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTCAGAGAATTGTTCCAAAAATATGTCTTGTTCTCCTTGGACAATGCAAATCATGAGAAACTCAACAACACGTGCTCGGGAAAGGCTCTTAAAGTTACAGAGGATAACATTCAAATGTTGTTAGATGTTGCTTCTGAACAGGCAAATAGAGAGTTATTACTGCAGAAGCACTTTTTTGCGTTGCTTTCTGCCGCCCGGAAGGTGGCATCACATGTTGACCGCAGACAAAATCCGCATGCCACTAGCAATGGTCTCTATTTTGACCAAACTTTCTTTACTTCAATTGGCCAGCATTCACAATATCCCCTGAACAAACCCTCCGAAAGGACAACATTTGCTAATTCGGCCCAGAGCAAGAAGTTACTGGCAGCTGCACTGGAAGACATGAGTAGGCCAGAGAATGACAAAACATTCCTCTCTAACCAGGGTGAAGGCATGCCGGTGAGTGCAGATCAGGTGGATATTACCCTGGAGTTCCCGAAAGAGGAAAGTGATTCCTTATCCTCATTTCCATCTGTTATAAAGTTATCAATAAAAGGGGATGAAGCACCGCCATCTTTAAATAAGCACACAAGAGATGATCATCTTAAAAATTGTTTTTCTGCTGCTGAGAATCGTTTCAGGGAGGTAACGAGAGCTTGTGAAGAAGACAGATCTGGATGGGCTTCATCCACATTCCCAACAAATGATGCAAAGTCTCGACCTGGATCCAGGATACAATCTTCTGGAAAGCAAAGGTCTTCCATCTCCGATGTTACTAAGCCGTCTAGGGGAAAGACCAAAAGAGCTTCAGTGGATTCTAGTGAAATGCATCGCCGTCAAGCTGAACCATTATTCCCGCCAATGCCATTGCTTCCTGAACTGGCATTGGATCTCCCTTCATCTTCTATTAGTGAGTTTGGGTTTAACACGGATAGAAATCTCCCCTTTGATTTGAATGAGGAAAGTTCATTGGAAAGGGAAAATTTTGGAGTCATCCCACATGATTATATAGCTGAATTAATCTCAGACCTTGATGATTGTACAACATTCCCTGAGTATACTGATATTAGATAA 6144 0.4123 MASKGQRSKVDHDYKAKRPKALEAPKDPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVSLKASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELEVKKKKARDKQLEFLLGQTERYSTMLAENLVDTHTPAGKISAEHHTGIQCKDIDGDIINEPLEANVEYQSITPDNDEEYDVQSDDVSDDDEQTLEEDEALITKEERQEELAALQNEMDLPIEELLKRYAGDKGELTRHESSPDRSEDGEKIVRTDGVDGQEEPVLENGDHISISKISTSNSGTVPGRRCDDNNGDVATPTNNLSQNEDHQFGSCKEVSIEAANENVPFDFSDEEEDGDFLFGTEDKDDETTLSEEEKLDRVDTIDPKDEIALLQKESNMSVEELLARYKKDLSDDGDQEDESDYESASSEGHQNSPVHVDEDAEQKVHTVSVGEDMKSGEQLAAVQTQAEVQGEGPCENSEERESDDIIADAAAAARSAQPTGNTFSTTKVRTKSPFLLKYTLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKIEHVIYCRLSKRQRNLYEDFIASSETQATLANANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMCGIDIQLSSSICSMLLPSSFSTVDLEGLGLLFTHLDYSMTSWESDEVQSIETPATLIMERTDMADLEVTKPGLKCQKRQQGTNIFEEIRKAIWEERISQAKERAAAIAWWNSLRCKKRPIYSTTLRELVTIRHPVYDIYQKKANPVSYLFPSKLADIVLSPVERFQRTIDVVESFMFAIPAARASPPVCWCSKRETTVFLNPSYKQRCSDILSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELATLLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGAYNTEFFKKLDPMELFSGHRTLSIKDTPKEKSQNRGEVSVTNADVEAALKHVEDEADYMALKKVELEEAVDNQEFTEEASGRLEEDEYANEDDEPQELGESVSNLNKEDALMLNGGDPKEDKPPSVVAKEDDVDMLADVNQMAEAAAAAGQALSAFESALHPIDRYAIRFLELWDPIIDKAALESEVRIEDTEWELDRIERYKEEMEAEIDEDEEPLVYESWDADFATTAYRQQVEALAQHQLMEELEYEAKLKEEAEEEKKTQTPNDSKLKPKKKPKKAKFKSLKKGSLTSSSRTVKDELRAVPMAIDDDAATSLDLVTPSSSRHKKRKKSKLITDGEEEKRFKKSKKYKRDSLDNYDSDLESNSIDMQDEHAESDPCKSLVVLEQKTVGRSKMGGKISITPMPVKRVFMIKAEKLKKGNIWYRDCIPSADFWLPQEDAILCAVVHEYGPNWSFVSEMLYGMTAGGAYRGRYRHPVHCCERFRELFQKYVLFSLDNANHEKLNNTCSGKALKVTEDNIQMLLDVASEQANRELLLQKHFFALLSAARKVASHVDRRQNPHATSNGLYFDQTFFTSIGQHSQYPLNKPSERTTFANSAQSKKLLAAALEDMSRPENDKTFLSNQGEGMPVSADQVDITLEFPKEESDSLSSFPSVIKLSIKGDEAPPSLNKHTRDDHLKNCFSAAENRFREVTRACEEDRSGWASSTFPTNDAKSRPGSRIQSSGKQRSSISDVTKPSRGKTKRASVDSSEMHRRQAEPLFPPMPLLPELALDLPSSSISEFGFNTDRNLPFDLNEESSLERENFGVIPHDYIAELISDLDDCTTFPEYTDIR 2047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07489 2047 MobiDBLite consensus disorder prediction 290 306 - -
Vivi1g07489 2047 MobiDBLite consensus disorder prediction 1547 1562 - -
Vivi1g07489 2047 MobiDBLite consensus disorder prediction 1469 1485 - -
Vivi1g07489 2047 SMART helicmild6 1093 1176 IPR001650 -
Vivi1g07489 2047 FunFam Photoperiod independent early flowering protein 1644 1705 - -
Vivi1g07489 2047 MobiDBLite consensus disorder prediction 247 328 - -
Vivi1g07489 2047 Coils Coil 1454 1478 - -
Vivi1g07489 2047 ProSiteProfiles Myb-like domain profile. 1648 1701 IPR001005 -
Vivi1g07489 2047 MobiDBLite consensus disorder prediction 346 371 - -
Vivi1g07489 2047 MobiDBLite consensus disorder prediction 247 284 - -
Vivi1g07489 2047 SMART ultradead3 518 711 IPR014001 -
Vivi1g07489 2047 Coils Coil 215 235 - -
Vivi1g07489 2047 PANTHER HELICASE SRCAP-RELATED 13 1944 - -
Vivi1g07489 2047 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 768 833 - -
Vivi1g07489 2047 MobiDBLite consensus disorder prediction 1298 1312 - -
Vivi1g07489 2047 MobiDBLite consensus disorder prediction 460 483 - -
Vivi1g07489 2047 CDD DEXQc_SRCAP 522 744 - -
Vivi1g07489 2047 MobiDBLite consensus disorder prediction 1 33 - -
Vivi1g07489 2047 MobiDBLite consensus disorder prediction 189 213 - -
Vivi1g07489 2047 CDD SF2_C_SNF 1052 1187 - -
Vivi1g07489 2047 MobiDBLite consensus disorder prediction 1533 1562 - -
Vivi1g07489 2047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 746 1236 IPR027417 -
Vivi1g07489 2047 Gene3D - 1037 1282 IPR027417 -
Vivi1g07489 2047 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 534 699 IPR014001 -
Vivi1g07489 2047 Pfam Helicase conserved C-terminal domain 1064 1176 IPR001650 -
Vivi1g07489 2047 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1067 1217 IPR001650 -
Vivi1g07489 2047 MobiDBLite consensus disorder prediction 405 447 - -
Vivi1g07489 2047 Pfam HSA domain 28 93 IPR014012 -
Vivi1g07489 2047 MobiDBLite consensus disorder prediction 313 328 - -
Vivi1g07489 2047 MobiDBLite consensus disorder prediction 1951 1969 - -
Vivi1g07489 2047 Pfam SNF2-related domain 539 811 IPR000330 GO:0005524|GO:0140658
Vivi1g07489 2047 Gene3D - 768 846 - -
Vivi1g07489 2047 MobiDBLite consensus disorder prediction 1285 1315 - -
Vivi1g07489 2047 MobiDBLite consensus disorder prediction 1469 1512 - -
Vivi1g07489 2047 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1034 1283 - -
Vivi1g07489 2047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 744 IPR027417 -
Vivi1g07489 2047 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Vivi1g07489 2047 MobiDBLite consensus disorder prediction 192 213 - -
Vivi1g07489 2047 MobiDBLite consensus disorder prediction 346 385 - -
Vivi1g07489 2047 FunFam Photoperiod-independent early flowering 1 492 767 - -
Vivi1g07489 2047 SMART bromneu2 23 94 IPR014012 -
Vivi1g07489 2047 Gene3D - 491 767 IPR038718 -
Vivi1g07489 2047 Coils Coil 1403 1423 - -
Vivi1g07489 2047 MobiDBLite consensus disorder prediction 1914 1977 - -
Vivi1g07489 2047 MobiDBLite consensus disorder prediction 1917 1950 - -
Vivi1g07489 2047 Gene3D - 1645 1705 - -
Vivi1g07489 2047 SUPERFAMILY Homeodomain-like 1646 1703 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07489 Vivi-Chr1 193305732 193333556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07489 542 814 RAD5 or RAD16-like Gene Family AT5G43530 30.124 2.05e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi1g07489 SNF2_N 2.5e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07489 K11661 - gmx:100794898 3111.24