Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07488 ATGGCGTCTAAAGGTCAAAGGTCTAAGGTTGATCATGATTATAAAGCTAAACGGCCGAAGGCTCTTGAAGCTCCAAAGGATCCTAGACGACCCAAAACTCATTGGGACCATGTTTTAGAAGAGATGGTGTGGCTGTCAAAGGACTTCGAGTCAGAAAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTTCTTTAAAAGCCAGCAAAGGCATGTTAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAGCGGTTAAGAAAAGTTGCACTAAATATTTCTAAGGATGTTAAGAAATTTTGGACAAAAATAGAAAAACTGGTTCTTTACAAGCATCAAATGGAACTCGAGGTGAAGAAAAAAAAGGCACGTGACAAACAGCTTGAGTTTCTTTTAGGTCAAACTGAGAGATACTCAACTATGTTGGCCGAGAATCTCGTGGATACTCATACACCAGCAGGGAAAATTTCTGCAGAGCATCACACAGGTATTCAATGCAAAGATATAGATGGAGACATCATCAATGAACCTCTGGAAGCTAATGTTGAGTATCAGTCCATCACACCTGATAATGATGAAGAATATGATGTACAATCTGATGATGTATCGGATGATGATGAGCAAACCCTCGAAGAAGATGAGGCTCTTATAACTAAAGAAGAAAGGCAAGAGGAATTGGCAGCTTTGCAGAATGAAATGGATCTTCCAATTGAGGAGTTACTCAAACGTTATGCTGGAGATAAAGGAGAATTGACAAGGCATGAAAGTAGTCCAGATCGTAGTGAAGATGGTGAAAAAATAGTTAGAACTGATGGTGTTGATGAAAATGGAGATCATATATCTATAAGCAAAATAAGTACAAGCAACTCCGGCACGGTCCCTGGTCGACGTTGTGATGACAATAATGGTGATGTAGCTACACCAACAAACAATCTATCTCAAAATGAGGATCATCAATTTGGAAGTTGTAAAGAGGTTTCCATTGAGGCAGCCAATGAAAATGTTCCATTTGATTTTTCTGATGAAGAGGAAGATGGCGACTTTTTGTTTGGCACAGAGGATAAGGATGATGAAACAACCTTATCTGAGGAAGAAAAACTGGACAGAGTTGATACAATTGATCCAAAAGATGAGATTGCATTACTACAAAAAGAGAGTAACATGTCGGTTGAGGAACTACTTGCAAGGTATAAAAAGGACCTGAGTGATGATGGGGATCAGGAAGATGAGTCTGATTATGAGTCTGCTTCATCAGAAGGCCATCAGAATTCACCGGTCCATGTTGATGAGGATGCTGAGCAGAAAGTTCATACTGTTTCTGTTGGTGAAGATATGAAGTCTGGCGAGCAACTGGCTGCCGTACAGACCCAGGCAGAAGTACAGGGGGAAGGACCTTGTGAAAATTCAGAGGAAAGAGAAAGTGACGATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACGACTAAAGTGCGTACAAAATCCCCCTTTCTACTCAAGTACACTCTTCGTGAATATCAACATATTGGATTGGATTGGCTCGTAACAATGTATGAAAAAAAGCTGAATGGAATTCTGGCAGATGAAATGGGGCTTGGAAAAACGATAATGACTATAGCTTTGCTTGCACATCTTGCCTGTGAAAAGGGGATTTGGGGTCCACATCTAATTGTAGTGCCAACTAGTGTGATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCGTTTAAAATTTTGACCTATTTTGGAAGCGCAAAGGAGCGGAAACATAAAAGACAAGGATGGTTAAAACCAAACTCATTTCACGTATGCATAACAACATATAGATTAGTTATTCAGGATTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCACCTCATTAAAAACTGGAAATCACAAAGGTGGCAGACACTGTTGAATTTCAATTCAAAACGACGAATTCTGTTGACTGGTACACCGCTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTCCAGTCACACCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGAATGGTAGAGGGAGAGGAAAAAGTTAATAAGGAGGTTGTTGATCGCCTGCATAATGTCCTTCGTCCATTCTTACTCCGTCGATTAAAGAGAGATGTAGAAAAGCAACTTCCCATGAAAATTGAGCATGTCATATACTGTAGGCTGTCAAAGAGGCAGAGGAATTTGTACGAGGATTTTATTGCTAGCTCAGAGACTCAAGCTACTCTTGCAAATGCCAATTTTTTTGGGATGATCAGTATTATCATGCAACTTCGCAAAGTTTGTAATCATCCTGACCTATTTGAGGGTCGTCCAATCGTCAGTTCTTTTGATATGTGTGGGATTGATATTCAGTTAAGTTCTTCTATTTGCTCCATGCTTTTGCCTAGCTCCTTTTCAACAGTTGACTTAGAAGGTTTGGGGCTTTTATTTACTCATCTTGACTATAGCATGACTTCTTGGGAGAGTGATGAAGTGCAATCTATTGAGACCCCTGCAACTTTAATTATGGAACGCACTGATATGGCTGATCTGGAAGTAACTAAGCCTGGACTGAAGTGTCAGAAAAGGCAGCAAGGAACGAACATTTTCGAAGAGATTCGAAAAGCAATTTGGGAAGAGAGAATATCACAGGCCAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAAACGACCCATCTACTCAACCACTCTAAGGGAGCTTGTTACCATAAGGCATCCTGTATATGATATTTATCAAAAGAAGGCAAATCCTGTTTCATACTTGTTCCCATCAAAACTGGCTGACATTGTTCTCTCCCCAGTTGAACGATTTCAAAGGACTATTGATGTGGTTGAAAGTTTCATGTTTGCCATTCCTGCCGCCCGAGCTTCCCCTCCTGTTTGCTGGTGCAGTAAAAGGGAGACAACTGTGTTTCTGAACCCATCTTACAAGCAGCGATGCTCTGATATTCTGTCACCACTGTTGTCACCAATCAGGCCCGCAATTGTCCGTCGTCAAGTATATTTCCCAGATAGGCGACTTATACAATTCGACTGTGGAAAATTACAGGAGCTAGCAACTTTGCTGAGGAGATTAAAATCAGAAGGTCACCGAGCTCTGATATTCACTCAGATGACTAAGATGCTTGACATATTAGAAGCGTTCATTAATTTGTATGGTTATACTTACATGCGCTTAGATGGATCAACGCAGCCAGAGGAGAGGCAGACCTTAATGCAGCGTTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACTCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCTCAAGATCGGTGCCACAGAATTGGTCAGACACGTGAAGTGCATATATATCGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAAGCAAAAGCGCGCACTTGATGATTTGGTTATACAAAGTGGGGCTTATAATACTGAGTTCTTCAAAAAGCTTGATCCGATGGAACTATTTTCAGGTCATAGAACACTTTCAATTAAAGACACGCCGAAGGAGAAAAGCCAGAACAGGGGAGAAGTTTCTGTTACCAATGCAGATGTGGAGGCTGCATTAAAACATGTAGAAGATGAGGCAGATTATATGGCGCTGAAGAAAGTTGAACTGGAAGAAGCCGTGGATAATCAGGAATTTACAGAAGAAGCCAGTGGGAGACTTGAAGAGGATGAATATGCAAATGAGGATGATGAGCCCCAAGAATTAGGCGAATCTGTTTCCAATTTGAATAAAGAGGATGCATTAATGTTAAATGGAGGTGATCCTAAGGAAGATAAACCGCCCTCTGTTGTTGCCAAAGAAGATGATGTTGACATGCTGGCAGATGTGAACCAGATGGCAGAAGCTGCAGCTGCAGCTGGGCAGGCGTTATCAGCATTTGAGAGTGCGCTACATCCTATTGACCGATATGCCATTCGTTTTCTAGAGCTGTGGGATCCAATTATAGATAAAGCAGCCTTGGAATCTGAAGTCAGGATTGAGGATACTGAATGGGAATTGGATCGCATTGAAAGGTATAAGGAGGAGATGGAAGCCGAAATTGACGAAGATGAGGAGCCTCTTGTATATGAAAGCTGGGATGCAGATTTTGCAACAACAGCTTATCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAAGAACTTGAATATGAAGCTAAACTGAAAGAGGAAGCTGAAGAAGAGAAAAACAGGACTCAAACACCAAATGATTCCAAGCTCAAGCCTAAAAAGAAACCCAAGAAAGCAAAGTTCAAATCTCTGAAAAAAGGATCTTTAACCTCTAGCTCAAGAACTGTGAAAGATGAGCTACGAGCAGTGCCAATGGCCATAGATGATGATGCTGCCACTAGTCTTGATCTTGTGACTCCAAGTTCAAGTAGACATAAAAAACGCAAGAAGTCTAAATTAATAACTGATGGTGAAGAAGAAAAGAGATTTAAGAAGTCCAAAAAGTACAAGAGGGATTCTCTTGACAATTATGATTCAGATTTAGAATCCAATTCAATAGATATGCAGGATGAACATGCAGAATCAGATCCATGTAAAAGTCTGGTTGTGTTGGAACAGAAAACAGTTGGCAGGAGTAAGATGGGAGGAAAAATATCCATCACTCCAATGCCTGTGAAACGGGTCTTTATGATAAAAGCCGAAAAATTGAAGAAGGGAAATATTTGGTACAGAGATTGTATTCCATCAGCTGATTTTTGGCTGCCTCAGGAGGATGCAATATTATGTGCAGTTGTTCATGAGTATGGTCCTAACTGGAGCTTTGTTAGTGAAATGCTTTATGGAATGACTGCTGGTGGGGCATATAGGGGGAGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTCAGAGAATTGTTCCAAAAATATGTCTTGTTCTCCTTGGACAATGCAAATCATGAGAAACTCAACAACACGTGCTCGGGAAAGGCTCTTAAAGTTACAGAGGATAACATTCAAATGTTGTTAGATGTTGCTTCTGAACAGGCAAATAGAGAGTTATTACTGCAGAAGCACTTTTTTGCGTTGCTTTCTGCCGCCCGGAAGGTGGCATCACATGTTGACCGCAGACAAAATCCGCATGCCACTAGCAATGGTCTCTATTTTGACCAAACTTTCTTTACTTCAATTGGCCAGCATTCACAATATCCCCTGAACAAACCCTCCGAAAGGACAACATTTGCTAATTCGGCCCAGAGCAAGAAGTTACTGGCAGCTGCACTGGAAGACATGAGTAGGCCAGAGAATGACAAAACATTCCTCTCTAACCAGGGTGAAGGCATGCCGGTGAGTGCAGATCAGGTGGATATTACCCTGGAGTTCCCGAAAGAGGAAAGTGATTCCTTATCCTCATTTCCATCTGTTATAAAGTTATCAATAAAAGGGGATGAAGCACCGCCATCTTTAAATAAGCACACAAGAGATGATCATCTTAAAAATTGTTTTTCTGCTGCTGAGAATCGTTTCAGGGAGGTAACGAGAGCTTGTGAAGAAGACAGATCTGGATGGGCTTCATCCACATTCCCAACAAATGATGCAAAGTCTCGACCTGGATCCAGGATACAATCTTCTGGAAAGCAAAGGTCTTCCATCTCCGATGTTACTAAGCCGTCTAGGGGAAAGACCAAAAGAGCTTCAGTGGATTCTAGTGAAATGCATCGCCGTCAAGCTGAACCATTATTCCCGCCAATGCCATTGCTTCCTGAACTGGCATTGGATCTCCCTTCATCTTCTATTAGTGAGTTTGGGTTTAACACGGATAGAAATCTCCCCTTTGATTTGAATGAGGAAAGTTCATTGGAAAGGGAAAATTTTGGAGTCATCCCACATGATTATATAGCTGAATTAATCTCAGACCTTGATGATTGTACAACATTCCCTGAGTATACTGATATTAGATAA 6126 0.4122 MASKGQRSKVDHDYKAKRPKALEAPKDPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVSLKASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELEVKKKKARDKQLEFLLGQTERYSTMLAENLVDTHTPAGKISAEHHTGIQCKDIDGDIINEPLEANVEYQSITPDNDEEYDVQSDDVSDDDEQTLEEDEALITKEERQEELAALQNEMDLPIEELLKRYAGDKGELTRHESSPDRSEDGEKIVRTDGVDENGDHISISKISTSNSGTVPGRRCDDNNGDVATPTNNLSQNEDHQFGSCKEVSIEAANENVPFDFSDEEEDGDFLFGTEDKDDETTLSEEEKLDRVDTIDPKDEIALLQKESNMSVEELLARYKKDLSDDGDQEDESDYESASSEGHQNSPVHVDEDAEQKVHTVSVGEDMKSGEQLAAVQTQAEVQGEGPCENSEERESDDIIADAAAAARSAQPTGNTFSTTKVRTKSPFLLKYTLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKIEHVIYCRLSKRQRNLYEDFIASSETQATLANANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMCGIDIQLSSSICSMLLPSSFSTVDLEGLGLLFTHLDYSMTSWESDEVQSIETPATLIMERTDMADLEVTKPGLKCQKRQQGTNIFEEIRKAIWEERISQAKERAAAIAWWNSLRCKKRPIYSTTLRELVTIRHPVYDIYQKKANPVSYLFPSKLADIVLSPVERFQRTIDVVESFMFAIPAARASPPVCWCSKRETTVFLNPSYKQRCSDILSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELATLLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGAYNTEFFKKLDPMELFSGHRTLSIKDTPKEKSQNRGEVSVTNADVEAALKHVEDEADYMALKKVELEEAVDNQEFTEEASGRLEEDEYANEDDEPQELGESVSNLNKEDALMLNGGDPKEDKPPSVVAKEDDVDMLADVNQMAEAAAAAGQALSAFESALHPIDRYAIRFLELWDPIIDKAALESEVRIEDTEWELDRIERYKEEMEAEIDEDEEPLVYESWDADFATTAYRQQVEALAQHQLMEELEYEAKLKEEAEEEKNRTQTPNDSKLKPKKKPKKAKFKSLKKGSLTSSSRTVKDELRAVPMAIDDDAATSLDLVTPSSSRHKKRKKSKLITDGEEEKRFKKSKKYKRDSLDNYDSDLESNSIDMQDEHAESDPCKSLVVLEQKTVGRSKMGGKISITPMPVKRVFMIKAEKLKKGNIWYRDCIPSADFWLPQEDAILCAVVHEYGPNWSFVSEMLYGMTAGGAYRGRYRHPVHCCERFRELFQKYVLFSLDNANHEKLNNTCSGKALKVTEDNIQMLLDVASEQANRELLLQKHFFALLSAARKVASHVDRRQNPHATSNGLYFDQTFFTSIGQHSQYPLNKPSERTTFANSAQSKKLLAAALEDMSRPENDKTFLSNQGEGMPVSADQVDITLEFPKEESDSLSSFPSVIKLSIKGDEAPPSLNKHTRDDHLKNCFSAAENRFREVTRACEEDRSGWASSTFPTNDAKSRPGSRIQSSGKQRSSISDVTKPSRGKTKRASVDSSEMHRRQAEPLFPPMPLLPELALDLPSSSISEFGFNTDRNLPFDLNEESSLERENFGVIPHDYIAELISDLDDCTTFPEYTDIR 2041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 1228 1247 - -
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 1462 1506 - -
Vivi1g07488 2041 SMART ultradead3 511 704 IPR014001 -
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 1541 1567 - -
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 1278 1308 - -
Vivi1g07488 2041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 499 737 IPR027417 -
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 398 440 - -
Vivi1g07488 2041 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 761 826 - -
Vivi1g07488 2041 Gene3D - 1030 1275 IPR027417 -
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 306 321 - -
Vivi1g07488 2041 ProSiteProfiles Myb-like domain profile. 1642 1695 IPR001005 -
Vivi1g07488 2041 Coils Coil 215 235 - -
Vivi1g07488 2041 PANTHER HELICASE SRCAP-RELATED 13 1938 - -
Vivi1g07488 2041 FunFam Photoperiod independent early flowering protein 1638 1699 - -
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 339 364 - -
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 189 213 - -
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 1 33 - -
Vivi1g07488 2041 Pfam Helicase conserved C-terminal domain 1057 1169 IPR001650 -
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 1945 1963 - -
Vivi1g07488 2041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 739 1228 IPR027417 -
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 339 378 - -
Vivi1g07488 2041 Coils Coil 1447 1471 - -
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 1462 1479 - -
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 247 281 - -
Vivi1g07488 2041 Coils Coil 1396 1416 - -
Vivi1g07488 2041 Pfam HSA domain 28 93 IPR014012 -
Vivi1g07488 2041 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1060 1210 IPR001650 -
Vivi1g07488 2041 Gene3D - 761 839 - -
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 247 321 - -
Vivi1g07488 2041 FunFam Photoperiod-independent early flowering 1 485 760 - -
Vivi1g07488 2041 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1027 1276 - -
Vivi1g07488 2041 Pfam SNF2-related domain 532 804 IPR000330 GO:0005524|GO:0140658
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 1291 1305 - -
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 1908 1971 - -
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 1911 1944 - -
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 1527 1571 - -
Vivi1g07488 2041 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Vivi1g07488 2041 Gene3D - 1639 1699 - -
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 192 213 - -
Vivi1g07488 2041 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 527 692 IPR014001 -
Vivi1g07488 2041 SMART bromneu2 23 94 IPR014012 -
Vivi1g07488 2041 SMART helicmild6 1086 1169 IPR001650 -
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 283 299 - -
Vivi1g07488 2041 SUPERFAMILY Homeodomain-like 1640 1697 IPR009057 -
Vivi1g07488 2041 MobiDBLite consensus disorder prediction 453 476 - -
Vivi1g07488 2041 Gene3D - 484 760 IPR038718 -
Vivi1g07488 2041 CDD DEXQc_SRCAP 515 737 - -
Vivi1g07488 2041 CDD SF2_C_SNF 1045 1180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07488 Vivi-Chr1 193305732 193333556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07488 535 807 RAD5 or RAD16-like Gene Family AT5G43530 30.124 2.10e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi1g07488 SNF2_N 2.5e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07488 K11661 - gmx:100794898 3114.71