Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07487 ATGGCGTCTAAAGGTCAAAGGTCTAAGGTTGATCATGATTATAAAGCTAAACGGCCGAAGGCTCTTGAAGCTCCAAAGGATCCTAGACGACCCAAAACTCATTGGGACCATGTTTTAGAAGAGATGGTGTGGCTGTCAAAGGACTTCGAGTCAGAAAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTTCTTTAAAAGCCAGCAAAGGCATGTTAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAGCGGTTAAGAAAAGTTGCACTAAATATTTCTAAGGATGTTAAGAAATTTTGGACAAAAATAGAAAAACTGGTTCTTTACAAGCATCAAATGGAACTCGAGGTGAAGAAAAAAAAGGCACGTGACAAACAGCTTGAGTTTCTTTTAGGTCAAACTGAGAGATACTCAACTATGTTGGCCGAGAATCTCGTGGATACTCATACACCAGCAGGGAAAATTTCTGCAGAGCATCACACAGGTATTCAATGCAAAGATATAGATGGAGACATCATCAATGAACCTCTGGAAGCTAATGTTGAGTATCAGTCCATCACACCTGATAATGATGAAGAATATGATGTACAATCTGATGATGTATCGGATGATGATGAGCAAACCCTCGAAGAAGATGAGGCTCTTATAACTAAAGAAGAAAGGCAAGAGGAATTGGCAGCTTTGCAGAATGAAATGGATCTTCCAATTGAGGAGTTACTCAAACGTTATGCTGGAGATAAAGAAAATGGAGATCATATATCTATAAGCAAAATAAGTACAAGCAACTCCGGCACGGTCCCTGGTCGACGTTGTGATGACAATAATGGTGATGTAGCTACACCAACAAACAATCTATCTCAAAATGAGGATCATCAATTTGGAAGTTGTAAAGAGGTTTCCATTGAGGCAGCCAATGAAAATGTTCCATTTGATTTTTCTGATGAAGAGGAAGATGGCGACTTTTTGTTTGGCACAGAGGATAAGGATGATGAAACAACCTTATCTGAGGAAGAAAAACTGGACAGAGTTGATACAATTGATCCAAAAGATGAGATTGCATTACTACAAAAAGAGAGTAACATGTCGGTTGAGGAACTACTTGCAAGGTATAAAAAGGACCTGAGTGATGATGGGGATCAGGAAGATGAGTCTGATTATGAGTCTGCTTCATCAGAAGGCCATCAGAATTCACCGGTCCATGTTGATGAGGATGCTGAGCAGAAAGTTCATACTGTTTCTGTTGGTGAAGATATGAAGTCTGGCGAGCAACTGGCTGCCGTACAGACCCAGGCAGAAGTACAGGGGGAAGGACCTTGTGAAAATTCAGAGGAAAGAGAAAGTGACGATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACGACTAAAGTGCGTACAAAATCCCCCTTTCTACTCAAGTACACTCTTCGTGAATATCAACATATTGGATTGGATTGGCTCGTAACAATGTATGAAAAAAAGCTGAATGGAATTCTGGCAGATGAAATGGGGCTTGGAAAAACGATAATGACTATAGCTTTGCTTGCACATCTTGCCTGTGAAAAGGGGATTTGGGGTCCACATCTAATTGTAGTGCCAACTAGTGTGATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCGTTTAAAATTTTGACCTATTTTGGAAGCGCAAAGGAGCGGAAACATAAAAGACAAGGATGGTTAAAACCAAACTCATTTCACGTATGCATAACAACATATAGATTAGTTATTCAGGATTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCACCTCATTAAAAACTGGAAATCACAAAGGTGGCAGACACTGTTGAATTTCAATTCAAAACGACGAATTCTGTTGACTGGTACACCGCTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTCCAGTCACACCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGAATGGTAGAGGGAGAGGAAAAAGTTAATAAGGAGGTTGTTGATCGCCTGCATAATGTCCTTCGTCCATTCTTACTCCGTCGATTAAAGAGAGATGTAGAAAAGCAACTTCCCATGAAAATTGAGCATGTCATATACTGTAGGCTGTCAAAGAGGCAGAGGAATTTGTACGAGGATTTTATTGCTAGCTCAGAGACTCAAGCTACTCTTGCAAATGCCAATTTTTTTGGGATGATCAGTATTATCATGCAACTTCGCAAAGTTTGTAATCATCCTGACCTATTTGAGGGTCGTCCAATCGTCAGTTCTTTTGATATGTGTGGGATTGATATTCAGTTAAGTTCTTCTATTTGCTCCATGCTTTTGCCTAGCTCCTTTTCAACAGTTGACTTAGAAGGTTTGGGGCTTTTATTTACTCATCTTGACTATAGCATGACTTCTTGGGAGAGTGATGAAGTGCAATCTATTGAGACCCCTGCAACTTTAATTATGGAACGCACTGATATGGCTGATCTGGAAGTAACTAAGCCTGGACTGAAGTGTCAGAAAAGGCAGCAAGGAACGAACATTTTCGAAGAGATTCGAAAAGCAATTTGGGAAGAGAGAATATCACAGGCCAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAAACGACCCATCTACTCAACCACTCTAAGGGAGCTTGTTACCATAAGGCATCCTGTATATGATATTTATCAAAAGAAGGCAAATCCTGTTTCATACTTGTTCCCATCAAAACTGGCTGACATTGTTCTCTCCCCAGTTGAACGATTTCAAAGGACTATTGATGTGGTTGAAAGTTTCATGTTTGCCATTCCTGCCGCCCGAGCTTCCCCTCCTGTTTGCTGGTGCAGTAAAAGGGAGACAACTGTGTTTCTGAACCCATCTTACAAGCAGCGATGCTCTGATATTCTGTCACCACTGTTGTCACCAATCAGGCCCGCAATTGTCCGTCGTCAAGTATATTTCCCAGATAGGCGACTTATACAATTCGACTGTGGAAAATTACAGGAGCTAGCAACTTTGCTGAGGAGATTAAAATCAGAAGGTCACCGAGCTCTGATATTCACTCAGATGACTAAGATGCTTGACATATTAGAAGCGTTCATTAATTTGTATGGTTATACTTACATGCGCTTAGATGGATCAACGCAGCCAGAGGAGAGGCAGACCTTAATGCAGCGTTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACTCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCTCAAGATCGGTGCCACAGAATTGGTCAGACACGTGAAGTGCATATATATCGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAAGCAAAAGCGCGCACTTGATGATTTGGTTATACAAAGTGGGGCTTATAATACTGAGTTCTTCAAAAAGCTTGATCCGATGGAACTATTTTCAGGTCATAGAACACTTTCAATTAAAGACACGCCGAAGGAGAAAAGCCAGAACAGGGGAGAAGTTTCTGTTACCAATGCAGATGTGGAGGCTGCATTAAAACATGTAGAAGATGAGGCAGATTATATGGCGCTGAAGAAAGTTGAACTGGAAGAAGCCGTGGATAATCAGGAATTTACAGAAGAAGCCAGTGGGAGACTTGAAGAGGATGAATATGCAAATGAGGATGATGAGCCCCAAGAATTAGGCGAATCTGTTTCCAATTTGAATAAAGAGGATGCATTAATGTTAAATGGAGGTGATCCTAAGGAAGATAAACCGCCCTCTGTTGTTGCCAAAGAAGATGATGTTGACATGCTGGCAGATGTGAACCAGATGGCAGAAGCTGCAGCTGCAGCTGGGCAGGCGTTATCAGCATTTGAGAGTGCGCTACATCCTATTGACCGATATGCCATTCGTTTTCTAGAGCTGTGGGATCCAATTATAGATAAAGCAGCCTTGGAATCTGAAGTCAGGATTGAGGATACTGAATGGGAATTGGATCGCATTGAAAGGTATAAGGAGGAGATGGAAGCCGAAATTGACGAAGATGAGGAGCCTCTTGTATATGAAAGCTGGGATGCAGATTTTGCAACAACAGCTTATCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAAGAACTTGAATATGAAGCTAAACTGAAAGAGGAAGCTGAAGAAGAGAAAAACAGGACTCAAACACCAAATGATTCCAAGCTCAAGCCTAAAAAGAAACCCAAGAAAGCAAAGTTCAAATCTCTGAAAAAAGGATCTTTAACCTCTAGCTCAAGAACTGTGAAAGATGAGCTACGAGCAGTGCCAATGGCCATAGATGATGATGCTGCCACTAGTCTTGATCTTGTGACTCCAAGTTCAAGTAGACATAAAAAACGCAAGAAGTCTAAATTAATAACTGATGGTGAAGAAGAAAAGAGATTTAAGAAGTCCAAAAAGTACAAGAGGGATTCTCTTGACAATTATGATTCAGATTTAGAATCCAATTCAATAGATATGCAGGATGAACATGCAGAATCAGATCCATGTAAAAGTCTGGTTGTGTTGGAACAGAAAACAGTTGGCAGGAGTAAGATGGGAGGAAAAATATCCATCACTCCAATGCCTGTGAAACGGGTCTTTATGATAAAAGCCGAAAAATTGAAGAAGGGAAATATTTGGTACAGAGATTGTATTCCATCAGCTGATTTTTGGCTGCCTCAGGAGGATGCAATATTATGTGCAGTTGTTCATGAGTATGGTCCTAACTGGAGCTTTGTTAGTGAAATGCTTTATGGAATGACTGCTGGTGGGGCATATAGGGGGAGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTCAGAGAATTGTTCCAAAAATATGTCTTGTTCTCCTTGGACAATGCAAATCATGAGAAACTCAACAACACGTGCTCGGGAAAGGCTCTTAAAGTTACAGAGGATAACATTCAAATGTTGTTAGATGTTGCTTCTGAACAGGCAAATAGAGAGTTATTACTGCAGAAGCACTTTTTTGCGTTGCTTTCTGCCGCCCGGAAGGTGGCATCACATGTTGACCGCAGACAAAATCCGCATGCCACTAGCAATGGTCTCTATTTTGACCAAACTTTCTTTACTTCAATTGGCCAGCATTCACAATATCCCCTGAACAAACCCTCCGAAAGGACAACATTTGCTAATTCGGCCCAGAGCAAGAAGTTACTGGCAGCTGCACTGGAAGACATGAGTAGGCCAGAGAATGACAAAACATTCCTCTCTAACCAGGGTGAAGGCATGCCGGTGAGTGCAGATCAGGTGGATATTACCCTGGAGTTCCCGAAAGAGGAAAGTGATTCCTTATCCTCATTTCCATCTGTTATAAAGTTATCAATAAAAGGGGATGAAGCACCGCCATCTTTAAATAAGCACACAAGAGATGATCATCTTAAAAATTGTTTTTCTGCTGCTGAGAATCGTTTCAGGGAGGTAACGAGAGCTTGTGAAGAAGACAGATCTGGATGGGCTTCATCCACATTCCCAACAAATGATGCAAAGTCTCGACCTGGATCCAGGATACAATCTTCTGGAAAGCAAAGGTCTTCCATCTCCGATGTTACTAAGCCGTCTAGGGGAAAGACCAAAAGAGCTTCAGTGGATTCTAGTGAAATGCATCGCCGTCAAGCTGAACCATTATTCCCGCCAATGCCATTGCTTCCTGAACTGGCATTGGATCTCCCTTCATCTTCTATTAGTGAGTTTGGGTTTAACACGGATAGAAATCTCCCCTTTGATTTGAATGAGGAAAGTTCATTGGAAAGGGAAAATTTTGGAGTCATCCCACATGATTATATAGCTGAATTAATCTCAGACCTTGATGATTGTACAACATTCCCTGAGTATACTGATATTAGATAA 6048 0.4125 MASKGQRSKVDHDYKAKRPKALEAPKDPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVSLKASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELEVKKKKARDKQLEFLLGQTERYSTMLAENLVDTHTPAGKISAEHHTGIQCKDIDGDIINEPLEANVEYQSITPDNDEEYDVQSDDVSDDDEQTLEEDEALITKEERQEELAALQNEMDLPIEELLKRYAGDKENGDHISISKISTSNSGTVPGRRCDDNNGDVATPTNNLSQNEDHQFGSCKEVSIEAANENVPFDFSDEEEDGDFLFGTEDKDDETTLSEEEKLDRVDTIDPKDEIALLQKESNMSVEELLARYKKDLSDDGDQEDESDYESASSEGHQNSPVHVDEDAEQKVHTVSVGEDMKSGEQLAAVQTQAEVQGEGPCENSEERESDDIIADAAAAARSAQPTGNTFSTTKVRTKSPFLLKYTLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKIEHVIYCRLSKRQRNLYEDFIASSETQATLANANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMCGIDIQLSSSICSMLLPSSFSTVDLEGLGLLFTHLDYSMTSWESDEVQSIETPATLIMERTDMADLEVTKPGLKCQKRQQGTNIFEEIRKAIWEERISQAKERAAAIAWWNSLRCKKRPIYSTTLRELVTIRHPVYDIYQKKANPVSYLFPSKLADIVLSPVERFQRTIDVVESFMFAIPAARASPPVCWCSKRETTVFLNPSYKQRCSDILSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELATLLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGAYNTEFFKKLDPMELFSGHRTLSIKDTPKEKSQNRGEVSVTNADVEAALKHVEDEADYMALKKVELEEAVDNQEFTEEASGRLEEDEYANEDDEPQELGESVSNLNKEDALMLNGGDPKEDKPPSVVAKEDDVDMLADVNQMAEAAAAAGQALSAFESALHPIDRYAIRFLELWDPIIDKAALESEVRIEDTEWELDRIERYKEEMEAEIDEDEEPLVYESWDADFATTAYRQQVEALAQHQLMEELEYEAKLKEEAEEEKNRTQTPNDSKLKPKKKPKKAKFKSLKKGSLTSSSRTVKDELRAVPMAIDDDAATSLDLVTPSSSRHKKRKKSKLITDGEEEKRFKKSKKYKRDSLDNYDSDLESNSIDMQDEHAESDPCKSLVVLEQKTVGRSKMGGKISITPMPVKRVFMIKAEKLKKGNIWYRDCIPSADFWLPQEDAILCAVVHEYGPNWSFVSEMLYGMTAGGAYRGRYRHPVHCCERFRELFQKYVLFSLDNANHEKLNNTCSGKALKVTEDNIQMLLDVASEQANRELLLQKHFFALLSAARKVASHVDRRQNPHATSNGLYFDQTFFTSIGQHSQYPLNKPSERTTFANSAQSKKLLAAALEDMSRPENDKTFLSNQGEGMPVSADQVDITLEFPKEESDSLSSFPSVIKLSIKGDEAPPSLNKHTRDDHLKNCFSAAENRFREVTRACEEDRSGWASSTFPTNDAKSRPGSRIQSSGKQRSSISDVTKPSRGKTKRASVDSSEMHRRQAEPLFPPMPLLPELALDLPSSSISEFGFNTDRNLPFDLNEESSLERENFGVIPHDYIAELISDLDDCTTFPEYTDIR 2015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07487 2015 Pfam HSA domain 28 93 IPR014012 -
Vivi1g07487 2015 Gene3D - 1004 1249 IPR027417 -
Vivi1g07487 2015 Pfam Helicase conserved C-terminal domain 1031 1143 IPR001650 -
Vivi1g07487 2015 SMART ultradead3 485 678 IPR014001 -
Vivi1g07487 2015 Pfam SNF2-related domain 506 778 IPR000330 GO:0005524|GO:0140658
Vivi1g07487 2015 Gene3D - 735 813 - -
Vivi1g07487 2015 FunFam Photoperiod independent early flowering protein 1612 1673 - -
Vivi1g07487 2015 CDD SF2_C_SNF 1019 1154 - -
Vivi1g07487 2015 CDD DEXQc_SRCAP 489 711 - -
Vivi1g07487 2015 Coils Coil 215 235 - -
Vivi1g07487 2015 Coils Coil 1370 1390 - -
Vivi1g07487 2015 MobiDBLite consensus disorder prediction 1252 1282 - -
Vivi1g07487 2015 SUPERFAMILY Homeodomain-like 1614 1671 IPR009057 -
Vivi1g07487 2015 SMART helicmild6 1060 1143 IPR001650 -
Vivi1g07487 2015 MobiDBLite consensus disorder prediction 1436 1453 - -
Vivi1g07487 2015 MobiDBLite consensus disorder prediction 1 33 - -
Vivi1g07487 2015 MobiDBLite consensus disorder prediction 189 213 - -
Vivi1g07487 2015 Gene3D - 458 734 IPR038718 -
Vivi1g07487 2015 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 735 800 - -
Vivi1g07487 2015 Gene3D - 1613 1673 - -
Vivi1g07487 2015 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1034 1184 IPR001650 -
Vivi1g07487 2015 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 501 666 IPR014001 -
Vivi1g07487 2015 MobiDBLite consensus disorder prediction 372 414 - -
Vivi1g07487 2015 Coils Coil 1421 1445 - -
Vivi1g07487 2015 MobiDBLite consensus disorder prediction 1501 1545 - -
Vivi1g07487 2015 MobiDBLite consensus disorder prediction 1202 1221 - -
Vivi1g07487 2015 MobiDBLite consensus disorder prediction 313 338 - -
Vivi1g07487 2015 FunFam Photoperiod-independent early flowering 1 459 734 - -
Vivi1g07487 2015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 711 IPR027417 -
Vivi1g07487 2015 MobiDBLite consensus disorder prediction 1919 1937 - -
Vivi1g07487 2015 MobiDBLite consensus disorder prediction 313 352 - -
Vivi1g07487 2015 MobiDBLite consensus disorder prediction 1515 1541 - -
Vivi1g07487 2015 MobiDBLite consensus disorder prediction 1436 1480 - -
Vivi1g07487 2015 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Vivi1g07487 2015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 713 1201 IPR027417 -
Vivi1g07487 2015 MobiDBLite consensus disorder prediction 192 213 - -
Vivi1g07487 2015 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1001 1250 - -
Vivi1g07487 2015 ProSiteProfiles Myb-like domain profile. 1616 1669 IPR001005 -
Vivi1g07487 2015 SMART bromneu2 23 94 IPR014012 -
Vivi1g07487 2015 MobiDBLite consensus disorder prediction 1882 1945 - -
Vivi1g07487 2015 MobiDBLite consensus disorder prediction 1265 1279 - -
Vivi1g07487 2015 PANTHER HELICASE SRCAP-RELATED 13 1912 - -
Vivi1g07487 2015 MobiDBLite consensus disorder prediction 427 449 - -
Vivi1g07487 2015 MobiDBLite consensus disorder prediction 1885 1918 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07487 Vivi-Chr1 193305732 193333556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07487 509 781 RAD5 or RAD16-like Gene Family AT5G43530 30.124 1.80e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi1g07487 SNF2_N 2.5e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07487 K11661 - gmx:100794898 3078.89