Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07486 ATGGCGTCTAAAGGTCAAAGGTCTAAGGTTGATCATGATTATAAAGCTAAACGGCCGAAGGCTCTTGAAGCTCCAAAGGATCCTAGACGACCCAAAACTCATTGGGACCATGTTTTAGAAGAGATGGTGTGGCTGTCAAAGGACTTCGAGTCAGAAAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTTCTTTAAAAGCCAGCAAAGGCATGTTAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAGCGGTTAAGAAAAGTTGCACTAAATATTTCTAAGGATGTTAAGAAATTTTGGACAAAAATAGAAAAACTGGTTCTTTACAAGCATCAAATGGAACTCGAGGTGAAGAAAAAAAAGGCACGTGACAAACAGCTTGAGTTTCTTTTAGGTCAAACTGAGAGATACTCAACTATGTTGGCCGAGAATCTCGTGGATACTCATACACCAGCAGGGAAAATTTCTGCAGAGCATCACACAGAGTATCAGTCCATCACACCTGATAATGATGAAGAATATGATGTACAATCTGATGATGTATCGGATGATGATGAGCAAACCCTCGAAGAAGATGAGGCTCTTATAACTAAAGAAGAAAGGCAAGAGGAATTGGCAGCTTTGCAGAATGAAATGGATCTTCCAATTGAGGAGTTACTCAAACGTTATGCTGGAGATAAAGGAGAATTGACAAGGCATGAAAGTAGTCCAGATCGTAGTGAAGATGGTGAAAAAATAGTTAGAACTGATGGTGTTGATGGTCAGGAAGAACCAGTATTGGAAAATGGAGATCATATATCTATAAGCAAAATAAGTACAAGCAACTCCGGCACGGTCCCTGGTCGACGTTGTGATGACAATAATGGTGATGTAGCTACACCAACAAACAATCTATCTCAAAATGAGGATCATCAATTTGGAAGTTGTAAAGAGGTTTCCATTGAGGCAGCCAATGAAAATGTTCCATTTGATTTTTCTGATGAAGAGGAAGATGGCGACTTTTTGTTTGGCACAGAGGATAAGGATGATGAAACAACCTTATCTGAGGAAGAAAAACTGGACAGAGTTGATACAATTGATCCAAAAGATGAGATTGCATTACTACAAAAAGAGAGTAACATGTCGGTTGAGGAACTACTTGCAAGGTATAAAAAGGACCTGAGTGATGATGGGGATCAGGAAGATGAGTCTGATTATGAGTCTGCTTCATCAGAAGGCCATCAGAATTCACCGGTCCATGTTGATGAGGATGCTGAGCAGAAAGTTCATACTGTTTCTGTTGGTGAAGATATGAAGTCTGGCGAGCAACTGGCTGCCGTACAGACCCAGGCAGAAGTACAGGGGGAAGGACCTTGTGAAAATTCAGAGGAAAGAGAAAGTGACGATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACGACTAAAGTGCGTACAAAATCCCCCTTTCTACTCAAGTACACTCTTCGTGAATATCAACATATTGGATTGGATTGGCTCGTAACAATGTATGAAAAAAAGCTGAATGGAATTCTGGCAGATGAAATGGGGCTTGGAAAAACGATAATGACTATAGCTTTGCTTGCACATCTTGCCTGTGAAAAGGGGATTTGGGGTCCACATCTAATTGTAGTGCCAACTAGTGTGATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCGTTTAAAATTTTGACCTATTTTGGAAGCGCAAAGGAGCGGAAACATAAAAGACAAGGATGGTTAAAACCAAACTCATTTCACGTATGCATAACAACATATAGATTAGTTATTCAGGATTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCACCTCATTAAAAACTGGAAATCACAAAGGTGGCAGACACTGTTGAATTTCAATTCAAAACGACGAATTCTGTTGACTGGTACACCGCTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTCCAGTCACACCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGAATGGTAGAGGGAGAGGAAAAAGTTAATAAGGAGGTTGTTGATCGCCTGCATAATGTCCTTCGTCCATTCTTACTCCGTCGATTAAAGAGAGATGTAGAAAAGCAACTTCCCATGAAAATTGAGCATGTCATATACTGTAGGCTGTCAAAGAGGCAGAGGAATTTGTACGAGGATTTTATTGCTAGCTCAGAGACTCAAGCTACTCTTGCAAATGCCAATTTTTTTGGGATGATCAGTATTATCATGCAACTTCGCAAAGTTTGTAATCATCCTGACCTATTTGAGGGTCGTCCAATCGTCAGTTCTTTTGATATGTGTGGGATTGATATTCAGTTAAGTTCTTCTATTTGCTCCATGCTTTTGCCTAGCTCCTTTTCAACAGTTGACTTAGAAGGTTTGGGGCTTTTATTTACTCATCTTGACTATAGCATGACTTCTTGGGAGAGTGATGAAGTGCAATCTATTGAGACCCCTGCAACTTTAATTATGGAACGCACTGATATGGCTGATCTGGAAGTAACTAAGCCTGGACTGAAGTGTCAGAAAAGGCAGCAAGGAACGAACATTTTCGAAGAGATTCGAAAAGCAATTTGGGAAGAGAGAATATCACAGGCCAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAAACGACCCATCTACTCAACCACTCTAAGGGAGCTTGTTACCATAAGGCATCCTGTATATGATATTTATCAAAAGAAGGCAAATCCTGTTTCATACTTGTTCCCATCAAAACTGGCTGACATTGTTCTCTCCCCAGTTGAACGATTTCAAAGGACTATTGATGTGGTTGAAAGTTTCATGTTTGCCATTCCTGCCGCCCGAGCTTCCCCTCCTGTTTGCTGGTGCAGTAAAAGGGAGACAACTGTGTTTCTGAACCCATCTTACAAGCAGCGATGCTCTGATATTCTGTCACCACTGTTGTCACCAATCAGGCCCGCAATTGTCCGTCGTCAAGTATATTTCCCAGATAGGCGACTTATACAATTCGACTGTGGAAAATTACAGGAGCTAGCAACTTTGCTGAGGAGATTAAAATCAGAAGGTCACCGAGCTCTGATATTCACTCAGATGACTAAGATGCTTGACATATTAGAAGCGTTCATTAATTTGTATGGTTATACTTACATGCGCTTAGATGGATCAACGCAGCCAGAGGAGAGGCAGACCTTAATGCAGCGTTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACTCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCTCAAGATCGGTGCCACAGAATTGGTCAGACACGTGAAGTGCATATATATCGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAAGCAAAAGCGCGCACTTGATGATTTGGTTATACAAAGTGGGGCTTATAATACTGAGTTCTTCAAAAAGCTTGATCCGATGGAACTATTTTCAGGTCATAGAACACTTTCAATTAAAGACACGCCGAAGGAGAAAAGCCAGAACAGGGGAGAAGTTTCTGTTACCAATGCAGATGTGGAGGCTGCATTAAAACATGTAGAAGATGAGGCAGATTATATGGCGCTGAAGAAAGTTGAACTGGAAGAAGCCGTGGATAATCAGGAATTTACAGAAGAAGCCAGTGGGAGACTTGAAGAGGATGAATATGCAAATGAGGATGATGAGCCCCAAGAATTAGGCGAATCTGTTTCCAATTTGAATAAAGAGGATGCATTAATGTTAAATGGAGGTGATCCTAAGGAAGATAAACCGCCCTCTGTTGTTGCCAAAGAAGATGATGTTGACATGCTGGCAGATGTGAACCAGATGGCAGAAGCTGCAGCTGCAGCTGGGCAGGCGTTATCAGCATTTGAGAGTGCGCTACATCCTATTGACCGATATGCCATTCGTTTTCTAGAGCTGTGGGATCCAATTATAGATAAAGCAGCCTTGGAATCTGAAGTCAGGATTGAGGATACTGAATGGGAATTGGATCGCATTGAAAGGTATAAGGAGGAGATGGAAGCCGAAATTGACGAAGATGAGGAGCCTCTTGTATATGAAAGCTGGGATGCAGATTTTGCAACAACAGCTTATCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAAGAACTTGAATATGAAGCTAAACTGAAAGAGGAAGCTGAAGAAGAGAAAAACAGGACTCAAACACCAAATGATTCCAAGCTCAAGCCTAAAAAGAAACCCAAGAAAGCAAAGTTCAAATCTCTGAAAAAAGGATCTTTAACCTCTAGCTCAAGAACTGTGAAAGATGAGCTACGAGCAGTGCCAATGGCCATAGATGATGATGCTGCCACTAGTCTTGATCTTGTGACTCCAAGTTCAAGTAGACATAAAAAACGCAAGAAGTCTAAATTAATAACTGATGGTGAAGAAGAAAAGAGATTTAAGAAGTCCAAAAAGTACAAGAGGGATTCTCTTGACAATTATGATTCAGATTTAGAATCCAATTCAATAGATATGCAGGATGAACATGCAGAATCAGATCCATGTAAAAGTCTGGTTGTGTTGGAACAGAAAACAGTTGGCAGGAGTAAGATGGGAGGAAAAATATCCATCACTCCAATGCCTGTGAAACGGGTCTTTATGATAAAAGCCGAAAAATTGAAGAAGGGAAATATTTGGTACAGAGATTGTATTCCATCAGCTGATTTTTGGCTGCCTCAGGAGGATGCAATATTATGTGCAGTTGTTCATGAGTATGGTCCTAACTGGAGCTTTGTTAGTGAAATGCTTTATGGAATGACTGCTGGTGGGGCATATAGGGGGAGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTCAGAGAATTGTTCCAAAAATATGTCTTGTTCTCCTTGGACAATGCAAATCATGAGAAACTCAACAACACGTGCTCGGGAAAGGCTCTTAAAGTTACAGAGGATAACATTCAAATGTTGTTAGATGTTGCTTCTGAACAGGCAAATAGAGAGTTATTACTGCAGAAGCACTTTTTTGCGTTGCTTTCTGCCGCCCGGAAGGTGGCATCACATGTTGACCGCAGACAAAATCCGCATGCCACTAGCAATGGTCTCTATTTTGACCAAACTTTCTTTACTTCAATTGGCCAGCATTCACAATATCCCCTGAACAAACCCTCCGAAAGGACAACATTTGCTAATTCGGCCCAGAGCAAGAAGTTACTGGCAGCTGCACTGGAAGACATGAGTAGGCCAGAGAATGACAAAACATTCCTCTCTAACCAGGGTGAAGGCATGCCGGTGAGTGCAGATCAGGTGGATATTACCCTGGAGTTCCCGAAAGAGGAAAGTGATTCCTTATCCTCATTTCCATCTGTTATAAAGTTATCAATAAAAGGGGATGAAGCACCGCCATCTTTAAATAAGCACACAAGAGATGATCATCTTAAAAATTGTTTTTCTGCTGCTGAGAATCGTTTCAGGGAGGTAACGAGAGCTTGTGAAGAAGACAGATCTGGATGGGCTTCATCCACATTCCCAACAAATGATGCAAAGTCTCGACCTGGATCCAGGATACAATCTTCTGGAAAGCAAAGGTCTTCCATCTCCGATGTTACTAAGCCGTCTAGGGGAAAGACCAAAAGAGCTTCAGTGGATTCTAGTGAAATGCATCGCCGTCAAGCTGAACCATTATTCCCGCCAATGCCATTGCTTCCTGAACTGGCATTGGATCTCCCTTCATCTTCTATTAGTGAGTTTGGGTTTAACACGGATAGAAATCTCCCCTTTGATTTGAATGAGGAAAGTTCATTGGAAAGGGAAAATTTTGGAGTCATCCCACATGATTATATAGCTGAATTAATCTCAGACCTTGATGATTGTACAACATTCCCTGAGTATACTGATATTAGATAA 6087 0.4128 MASKGQRSKVDHDYKAKRPKALEAPKDPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVSLKASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELEVKKKKARDKQLEFLLGQTERYSTMLAENLVDTHTPAGKISAEHHTEYQSITPDNDEEYDVQSDDVSDDDEQTLEEDEALITKEERQEELAALQNEMDLPIEELLKRYAGDKGELTRHESSPDRSEDGEKIVRTDGVDGQEEPVLENGDHISISKISTSNSGTVPGRRCDDNNGDVATPTNNLSQNEDHQFGSCKEVSIEAANENVPFDFSDEEEDGDFLFGTEDKDDETTLSEEEKLDRVDTIDPKDEIALLQKESNMSVEELLARYKKDLSDDGDQEDESDYESASSEGHQNSPVHVDEDAEQKVHTVSVGEDMKSGEQLAAVQTQAEVQGEGPCENSEERESDDIIADAAAAARSAQPTGNTFSTTKVRTKSPFLLKYTLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKIEHVIYCRLSKRQRNLYEDFIASSETQATLANANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMCGIDIQLSSSICSMLLPSSFSTVDLEGLGLLFTHLDYSMTSWESDEVQSIETPATLIMERTDMADLEVTKPGLKCQKRQQGTNIFEEIRKAIWEERISQAKERAAAIAWWNSLRCKKRPIYSTTLRELVTIRHPVYDIYQKKANPVSYLFPSKLADIVLSPVERFQRTIDVVESFMFAIPAARASPPVCWCSKRETTVFLNPSYKQRCSDILSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELATLLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGAYNTEFFKKLDPMELFSGHRTLSIKDTPKEKSQNRGEVSVTNADVEAALKHVEDEADYMALKKVELEEAVDNQEFTEEASGRLEEDEYANEDDEPQELGESVSNLNKEDALMLNGGDPKEDKPPSVVAKEDDVDMLADVNQMAEAAAAAGQALSAFESALHPIDRYAIRFLELWDPIIDKAALESEVRIEDTEWELDRIERYKEEMEAEIDEDEEPLVYESWDADFATTAYRQQVEALAQHQLMEELEYEAKLKEEAEEEKNRTQTPNDSKLKPKKKPKKAKFKSLKKGSLTSSSRTVKDELRAVPMAIDDDAATSLDLVTPSSSRHKKRKKSKLITDGEEEKRFKKSKKYKRDSLDNYDSDLESNSIDMQDEHAESDPCKSLVVLEQKTVGRSKMGGKISITPMPVKRVFMIKAEKLKKGNIWYRDCIPSADFWLPQEDAILCAVVHEYGPNWSFVSEMLYGMTAGGAYRGRYRHPVHCCERFRELFQKYVLFSLDNANHEKLNNTCSGKALKVTEDNIQMLLDVASEQANRELLLQKHFFALLSAARKVASHVDRRQNPHATSNGLYFDQTFFTSIGQHSQYPLNKPSERTTFANSAQSKKLLAAALEDMSRPENDKTFLSNQGEGMPVSADQVDITLEFPKEESDSLSSFPSVIKLSIKGDEAPPSLNKHTRDDHLKNCFSAAENRFREVTRACEEDRSGWASSTFPTNDAKSRPGSRIQSSGKQRSSISDVTKPSRGKTKRASVDSSEMHRRQAEPLFPPMPLLPELALDLPSSSISEFGFNTDRNLPFDLNEESSLERENFGVIPHDYIAELISDLDDCTTFPEYTDIR 2028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07486 2028 Gene3D - 1626 1686 - -
Vivi1g07486 2028 SMART ultradead3 498 691 IPR014001 -
Vivi1g07486 2028 Pfam HSA domain 28 93 IPR014012 -
Vivi1g07486 2028 MobiDBLite consensus disorder prediction 385 427 - -
Vivi1g07486 2028 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 514 679 IPR014001 -
Vivi1g07486 2028 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 724 IPR027417 -
Vivi1g07486 2028 PANTHER HELICASE SRCAP-RELATED 13 1925 - -
Vivi1g07486 2028 MobiDBLite consensus disorder prediction 1265 1295 - -
Vivi1g07486 2028 Gene3D - 1017 1262 IPR027417 -
Vivi1g07486 2028 Pfam SNF2-related domain 519 791 IPR000330 GO:0005524|GO:0140658
Vivi1g07486 2028 Gene3D - 748 826 - -
Vivi1g07486 2028 MobiDBLite consensus disorder prediction 1932 1950 - -
Vivi1g07486 2028 Gene3D - 471 747 IPR038718 -
Vivi1g07486 2028 MobiDBLite consensus disorder prediction 1 33 - -
Vivi1g07486 2028 MobiDBLite consensus disorder prediction 326 365 - -
Vivi1g07486 2028 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 726 1216 IPR027417 -
Vivi1g07486 2028 MobiDBLite consensus disorder prediction 1449 1466 - -
Vivi1g07486 2028 Coils Coil 1383 1403 - -
Vivi1g07486 2028 MobiDBLite consensus disorder prediction 293 308 - -
Vivi1g07486 2028 Pfam Helicase conserved C-terminal domain 1044 1156 IPR001650 -
Vivi1g07486 2028 SUPERFAMILY Homeodomain-like 1627 1684 IPR009057 -
Vivi1g07486 2028 MobiDBLite consensus disorder prediction 270 286 - -
Vivi1g07486 2028 MobiDBLite consensus disorder prediction 1895 1958 - -
Vivi1g07486 2028 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1014 1263 - -
Vivi1g07486 2028 MobiDBLite consensus disorder prediction 1514 1558 - -
Vivi1g07486 2028 Coils Coil 1434 1458 - -
Vivi1g07486 2028 MobiDBLite consensus disorder prediction 1898 1931 - -
Vivi1g07486 2028 MobiDBLite consensus disorder prediction 227 308 - -
Vivi1g07486 2028 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 748 813 - -
Vivi1g07486 2028 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1047 1197 IPR001650 -
Vivi1g07486 2028 FunFam Photoperiod independent early flowering protein 1625 1686 - -
Vivi1g07486 2028 MobiDBLite consensus disorder prediction 227 264 - -
Vivi1g07486 2028 MobiDBLite consensus disorder prediction 326 351 - -
Vivi1g07486 2028 Coils Coil 195 215 - -
Vivi1g07486 2028 SMART helicmild6 1073 1156 IPR001650 -
Vivi1g07486 2028 FunFam Photoperiod-independent early flowering 1 472 747 - -
Vivi1g07486 2028 MobiDBLite consensus disorder prediction 440 463 - -
Vivi1g07486 2028 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Vivi1g07486 2028 MobiDBLite consensus disorder prediction 1278 1292 - -
Vivi1g07486 2028 CDD SF2_C_SNF 1032 1167 - -
Vivi1g07486 2028 CDD DEXQc_SRCAP 502 724 - -
Vivi1g07486 2028 SMART bromneu2 23 94 IPR014012 -
Vivi1g07486 2028 ProSiteProfiles Myb-like domain profile. 1629 1682 IPR001005 -
Vivi1g07486 2028 MobiDBLite consensus disorder prediction 1528 1554 - -
Vivi1g07486 2028 MobiDBLite consensus disorder prediction 1449 1493 - -
Vivi1g07486 2028 MobiDBLite consensus disorder prediction 155 196 - -
Vivi1g07486 2028 MobiDBLite consensus disorder prediction 172 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07486 Vivi-Chr1 193305732 193333556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07486 522 794 RAD5 or RAD16-like Gene Family AT5G43530 30.124 1.96e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi1g07486 SNF2_N 2.5e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07486 K11661 - gmx:100794898 3078.5