LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g07466	ATGAACTTGTTTTTGCTACTCATTTTCAATATCATAGTTTTGACCAAAGTTGGTTGCTTAGATTTCAACTTCTCAACCTTCCAACCAGAAGATGCATCCAATTTGCGTTTAATCGCAAACTCAAGCATATTAAAAGGTGCCATCCAAGTAACCTCGGATGATCGTGGACAACCACTGGCTAATCTTTCCGGACGTGCTTTTTACAATAAACCATACACACTTTGGAACAAGAAAAACAACAAAACAGCTTCTTTCAACACAACTTTTGTTCTCAACATAACTCCTCAAACTTCCCCTGGTGGAGAAGGCATAGCCTTTATCTTAACTTCAGAACCCTATCTCCCTGAAAACAGTCATGGACAATGGCTTGGTATTGTTAATGCTTCTACAAACGGAACTTCTCGAGCCCAAATTCTTGCAGTAGAGTTTGATACACGGCAGAATTCGGCACAAGATGGTCCTTCAGACCATGTTGGAATCAACATAAATAGCATCTCTTCGTTGAAACAAAAACCATTACTAAACACTAAGGTCAATCTTTCGTCTGGTCTTAATGTAACTGTGAGAATTCAGTATTCCAATGATATAATATCTGTTTTTGGTTCAATGAATGAAAATTCACAAGATTCTATGGAGACCCTTTTGGAATCTCCACCTCTTAATCTCTCTTCTTATCTTAGTCAAGAGGTTTACATCGGTTTTTCTGCTTCAACAAGCAATTACACAGAGCTGAACTGTGTACTAAGATGGGAATTCAATGGAGAAGATATTGATATTGATGATGATATAAATCACTGGTGGATTTGGATTATAATTCCAATCGTGATAATCATAGGCGTGTTCGTCTTTATTTTGGCTTATGCTCGAAGGAAAAAAAATATGGAGATTTCAGATGATACATATCCACATATAGAGGATCAAATTCAACACTCATCTATGGCTCCAAAGAAATATGAATTAAAGGAACTGATAAAAGCAACAGGTGGATTCAGCCTTCAGAACAAGCTGGGCGAAGGTGGATTTGGAACTGTCTATAAGGGTATCCTTGAAAACAACAAAGACATAGCTGTGAAGAGAATCTCAAAGAACTCGCGTCAAGGAAAGCAAGAATTTATAGCAGAAGTAACAACAATTGGAAGTCTTCGCCATAAAAACTTAGTGAAACTCATTGGTTGGTGCTACGAACGGAAAGAGCTTCTTCTTGTTTACGAATTCATGCCCAATGGAAGTTTAGACAAATACCTATTTGACCAATCGAGTGATGAATTTGAATTACAATATTCAAAAATACTTGATTGGAAAACTAGGAATAGCGTGATTCGTGACGTGGCACGAGCACTGGATTATCTTCACAATGGATGTGAAAAAAGAGTGCTTCATAGAGACATTAAAGCAAGCAACATAATGTTGGACTTAGATTACAACGCAAAATTGGGTGATTTTGGATTGGCGCGAACAATTCAAAAGAGAAATGAAACTCATCATTCAACCAAGCAAATTGCAGGAACGCCGGGTTATATTGCACCAGAAACTTTTCTAATGGGAAGAGCAACGGTCGAAACAGATGTGTATGCATTTGGTGTGCTTGTTTTGGAAGTTGTGTGTGGAAAAAGACCTGAAAATGTGTATGCACAAGATGATTATAAAAATAGTATTGTGTATTGGGTTTGGGAGCTTTATGGAAAGGGGAAAAGTGTTAGTGTTGTTGATAAAAGGATATGTGTTGATGAAGAGGATGATATTGAGAGGACAACATTGGAAGAAATTGAAGTTGTGCTTATTCTTGGATTGGCTTGTTGTCATCCAAATCCAAATGAAAGGCCATCAATGAAAACTGTTTTGATGGTTCTAAAGGGAGAAGCTTCGCCTCCAACTGTTCCAATGGAAAGACCTGCTTTTGTTTGGCCAGCTATACCTTCATCTTTCAAAGATGGGGAAGATAGTTCTCTTATCAATGGAACTCTCACTCCATTCTCTCAACTTAGTGGAAGATAG	1995	0.3774	MNLFLLLIFNIIVLTKVGCLDFNFSTFQPEDASNLRLIANSSILKGAIQVTSDDRGQPLANLSGRAFYNKPYTLWNKKNNKTASFNTTFVLNITPQTSPGGEGIAFILTSEPYLPENSHGQWLGIVNASTNGTSRAQILAVEFDTRQNSAQDGPSDHVGININSISSLKQKPLLNTKVNLSSGLNVTVRIQYSNDIISVFGSMNENSQDSMETLLESPPLNLSSYLSQEVYIGFSASTSNYTELNCVLRWEFNGEDIDIDDDINHWWIWIIIPIVIIIGVFVFILAYARRKKNMEISDDTYPHIEDQIQHSSMAPKKYELKELIKATGGFSLQNKLGEGGFGTVYKGILENNKDIAVKRISKNSRQGKQEFIAEVTTIGSLRHKNLVKLIGWCYERKELLLVYEFMPNGSLDKYLFDQSSDEFELQYSKILDWKTRNSVIRDVARALDYLHNGCEKRVLHRDIKASNIMLDLDYNAKLGDFGLARTIQKRNETHHSTKQIAGTPGYIAPETFLMGRATVETDVYAFGVLVLEVVCGKRPENVYAQDDYKNSIVYWVWELYGKGKSVSVVDKRICVDEEDDIERTTLEEIEVVLILGLACCHPNPNERPSMKTVLMVLKGEASPPTVPMERPAFVWPAIPSSFKDGEDSSLINGTLTPFSQLSGR	664

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g07466	664	Pfam	Protein kinase domain	331	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g07466	664	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	19	261	-	-
	Vivi1g07466	664	SMART	serkin_6	330	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g07466	664	SUPERFAMILY	Concanavalin A-like lectins/glucanases	19	269	IPR013320	-
	Vivi1g07466	664	ProSitePatterns	Legume lectins beta-chain signature.	139	145	IPR019825	-
	Vivi1g07466	664	ProSiteProfiles	Protein kinase domain profile.	330	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g07466	664	ProSitePatterns	Protein kinases ATP-binding region signature.	336	358	IPR017441	GO:0005524
	Vivi1g07466	664	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	458	470	IPR008271	GO:0004672\|GO:0006468
	Vivi1g07466	664	Gene3D	-	19	262	-	-
	Vivi1g07466	664	Pfam	Legume lectin domain	20	258	IPR001220	GO:0030246
	Vivi1g07466	664	Gene3D	Transferase(Phosphotransferase) domain 1	406	623	-	-
	Vivi1g07466	664	Gene3D	Phosphorylase Kinase; domain 1	291	405	-	-
	Vivi1g07466	664	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	315	405	-	-
	Vivi1g07466	664	SUPERFAMILY	Protein kinase-like (PK-like)	312	617	IPR011009	-
	Vivi1g07466	664	FunFam	probable L-type lectin-domain containing receptor kinase S.5	406	623	-	-
	Vivi1g07466	664	CDD	STKc_IRAK	336	619	-	-
	Vivi1g07466	664	CDD	lectin_legume_LecRK_Arcelin_ConA	20	253	IPR001220	GO:0030246
	Vivi1g07466	664	PANTHER	-	48	627	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g07466	Vivi-Chr1	191787707	191790161	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g07466	20	633	Receptor kinase-like Gene Family	AT5G55830	35.627	3.45e-123	379

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vivi1g07466		Pkinase	3.7e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g07466	-		-	tpra:123883598	973.77