Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07460 ATGAACTTCATGTCTTTGCTACTCAAATATCAGATATTAACACTCATTTTCACTATCATAGCCTTAACCAAAGTTAGTTCCTTTTATTTCAATTTCCCAACTTTCCAACCAAGTGATGAATCCAAATTGATACTAAGCAAAAACTCAAAAATATACTTAGATGCCATCCAAATAACCCCAGATATCCGTGGTGAAATCAGGAATTATTCTGGACGTGCTTTTTACAATAAGCCATACACACTTTGGAACAAGAAAAATAACAAAATAGCTTCTTTCAACACCACTTTTGTTCTCAACATAACTCCTGAAACTTCCCCTGGTGGAGAAGGCATAGCCTTTATCTTAACAGCAGATACAACTCTCCCTGAAAACAGTCAAGGAGAATGGTTTGGTATCGTAAATGCTTCGACAAACGGAACTTCTCGAGCTGGAATTCTTGCAGTAGAGTTTGATACACGACAAAGTTCGACACAAGATGGCTCTCACAACCATGTTGGAATCAACATAAATAGCATTTCGCCGTTGACACAAGCATCGCTATCGAACACTAAGGTCAATCTTTCATCTGGTATAAATGTAACTGTGAGAATTCAATATTCTAATGATATAATATCTGTGTTTGCTTCCATGAGTGAAAATTCATTAGATTCTATGGAAACTCTTTTGGTTTCTCCACCTCTTAATCTATCCTCCTATCTTAAGCAAGAGGTTTACGTCGGTTTTTCTGCTTCAACGAGCAATTACACGCAGCTAAATTGTGTGAGAGCATGGGAATTCAATGGTTTAAATATTGTGGATGATAAAAAATATATCGTGTTGATTTGGATCATAGTCCCGGTTGTGATAATCATCGGCGGATTAGTCTTTTTCCTTGTTTATTTTCGAAGAAACAAAAACATGGGGATTTCAGAAGATACATATCCAAGGATAGAAGATCAAATTCAACACTCATCTATGACTCCAAAGAAATATGAGTTAAAGGAGTTGATTAAAGCAACAGGTGCATTCAGCCATCAGAACAAGCTTGGCCAAGGTGGATTTGGAACTGTTTATAAGGGTGTCCTTGGAAACAACAAAGAGATAGCTGTGAAGAGAGTCTCGAAGAACTCGCGTCAAGGAAAGCAAGAATTTATAGCAGAAGTAACAACAATTGGAAGCCTTCACCATAAGAACTTGGTGAAACTTATTGGTTGGTGCTATGAGAAAAAAGAGCTTCTCCTTGTTTATGAGTTCATGCCAAATGGAAGCTTAGACAAATACCTATTCAACCAATCGAGCAATGAATTTGAATCACATTATTCAAAAGTACTTGATTGGAGTACTAGAAGTTGTGTGATCCGTGGCGTGGCGCAAGCACTGGATTATCTTCACAATAATTGTGAAAAAAGAGTACTTCATAGAGACATTAAGGCAAGCAACATAATGTTGGATTTGGACTACAATGCAAAATTGGGTGATTTCGGATTGGCGCGGACAATTCAAAAGAGAAATGAAACTCATCATTCAACAAAGGAAATTGCGGGAACCCCGGGTTATATGGCACCGGAAACTTTTCTAACGGGGAGAGCAACGATGGAAACAGATGTGTATGCATTTGGTGTACTTGTTTTGGAAGTTGTATGTGGAAAAAGACCAGGAAATATGTATGCACAAGATGACTATAAAAATAGTATTGTGTATTGGGTTTGGGAGCATTATGGAAAGGGGAGAATTGTTAGTGTTGTTGATAAAAGGATAAGTGGTTGTGAAGAAGATGAGATTGAGATGGTGAAATTGGAGGATGAAGTTGAAATTGTGCTTATCCTTGGGTTGGCTTGTTGTCATCCAAACCCTAATAAAAGGCCATCAATACAAACAGTTTTGATGGTTCTTAATGGAGAAGCTTCTCCTCCCATTGTTCCCATGGAAAGACCTTCTTTTGTTTGGCCGGCCATGCCTTCATCATTCAAAGAAGGTGAAGATAACTCTTTTGTTAGTGGAACTCTCACTCCATTCACCCAACTAAGTGGCAGATAA 2016 0.3795 MNFMSLLLKYQILTLIFTIIALTKVSSFYFNFPTFQPSDESKLILSKNSKIYLDAIQITPDIRGEIRNYSGRAFYNKPYTLWNKKNNKIASFNTTFVLNITPETSPGGEGIAFILTADTTLPENSQGEWFGIVNASTNGTSRAGILAVEFDTRQSSTQDGSHNHVGININSISPLTQASLSNTKVNLSSGINVTVRIQYSNDIISVFASMSENSLDSMETLLVSPPLNLSSYLKQEVYVGFSASTSNYTQLNCVRAWEFNGLNIVDDKKYIVLIWIIVPVVIIIGGLVFFLVYFRRNKNMGISEDTYPRIEDQIQHSSMTPKKYELKELIKATGAFSHQNKLGQGGFGTVYKGVLGNNKEIAVKRVSKNSRQGKQEFIAEVTTIGSLHHKNLVKLIGWCYEKKELLLVYEFMPNGSLDKYLFNQSSNEFESHYSKVLDWSTRSCVIRGVAQALDYLHNNCEKRVLHRDIKASNIMLDLDYNAKLGDFGLARTIQKRNETHHSTKEIAGTPGYMAPETFLTGRATMETDVYAFGVLVLEVVCGKRPGNMYAQDDYKNSIVYWVWEHYGKGRIVSVVDKRISGCEEDEIEMVKLEDEVEIVLILGLACCHPNPNKRPSIQTVLMVLNGEASPPIVPMERPSFVWPAMPSSFKEGEDNSFVSGTLTPFTQLSGR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07460 671 Gene3D Phosphorylase Kinase; domain 1 299 411 - -
Vivi1g07460 671 Gene3D - 26 271 - -
Vivi1g07460 671 ProSiteProfiles Protein kinase domain profile. 336 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07460 671 PANTHER - 57 634 - -
Vivi1g07460 671 Gene3D Transferase(Phosphotransferase) domain 1 412 630 - -
Vivi1g07460 671 SMART serkin_6 336 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07460 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Vivi1g07460 671 FunFam Probable L-type lectin-domain containing receptor kinase S.5 27 268 - -
Vivi1g07460 671 CDD STKc_IRAK 342 626 - -
Vivi1g07460 671 CDD lectin_legume_LecRK_Arcelin_ConA 28 260 IPR001220 GO:0030246
Vivi1g07460 671 SUPERFAMILY Protein kinase-like (PK-like) 317 624 IPR011009 -
Vivi1g07460 671 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 276 IPR013320 -
Vivi1g07460 671 Pfam Legume lectin domain 30 261 IPR001220 GO:0030246
Vivi1g07460 671 Pfam Protein kinase domain 337 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07460 671 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Vivi1g07460 671 FunFam probable L-type lectin-domain containing receptor kinase S.5 412 630 - -
Vivi1g07460 671 FunFam Probable L-type lectin-domain containing receptor kinase S.5 321 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07460 Vivi-Chr1 191340637 191343030 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07460 8 640 Receptor kinase-like Gene Family AT5G55830 36.804 5.98e-125 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vivi1g07460 Pkinase 6.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07460 - - tpra:123883598 1006.9