Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07444 ATGTTTTCTTGGTTAGCAAGGCTTGTTTCAGCGTGCTTGAGACCAGTGAGACGGTATGCGCGTATGAACAAAGGTGATGATGAAGATTCTGATGGGGCTTCAACCTCTGGTGATGCCCTTGTTTGGTGTAAGGACCTTGAGAAACACTCCTGTGGTGAATTCTCGTTTGCTGTTGTTCAGGCTAATGAAGTTATAGAAGATCATAGTCAGGTTGAAACTGGTTCTGATGGTGTTTTTGTTGGTGTTTATGATGGACATGGTGGGGTTGAAGCTTCTCGGTTTGTTAATGATCATCTCTTTCATCATTTCATCCGGATTGCTCAGGAAAACGGTTCCATCTCCGAAGATATCATAAGGAACGCTGTTTCTGCTACGGAGGAAGGATTTCTAACTCTTGTTCGCAGGAGTTTTGGAATAAAGCCACTGATAGCAGCAATGGGTTCATGTTGTCTTGTCGGTGTTATCTGGAAAGGGACATTATATATCGCTAATCTTGGAGACTCTCGTGCCGTGATCGGTTCAACGGGTGGAGATTCTAAGAAGATTGTTGCTGAACAGTTGACCAAAGAGCATAATGCCTCCAGAGAGGAAATCAGAAGAGAACTCAGGAATTTGCATCCAGAAGATTCACAGATTGTTATGATGAAGCATGGAACATGGCGCGTTAAAGGCATCATCCAGGTATCAAGATCTATAGGTGATGCATATTTGAAGCGGCCGGAGTTCTCCTTCGACCCTTCATTCCCTCGGTTCCACTTGCCTGATCCTATCCGCCGAGCGGTTCTTTCAGCAGAGCCATCTATATGTTCAAGAGCTTTGCAACCTAACGATAAATTTGTTATATTTGCATCTGATGGCCTTTGGGAGCACATGACAAATCAGGAAGCTGCTGAGATTGTTCATAAAGGCCCTAGAAATGGGAGTGCAAGAAGACTTCTTCAGGCTGCGTTGACTGAGGCGGCGAGGAAAAGGGAAATGAGATATAAAGATATGCAGAAAGTTGAAAAAGGGATTCGTCGTTTTTTCCACGACGATATCACGGTGGTTGTTATCTTCATCGACCACGAGTTGCAAAAGAAGAATGTTAATGTTCCTGATAAGTCCGTGAAAGGGTTTATCGACACAGTTGGAACATCGAGATTTAGTAGTTTCCAAGAAATGCAATGA 1167 0.437 MFSWLARLVSACLRPVRRYARMNKGDDEDSDGASTSGDALVWCKDLEKHSCGEFSFAVVQANEVIEDHSQVETGSDGVFVGVYDGHGGVEASRFVNDHLFHHFIRIAQENGSISEDIIRNAVSATEEGFLTLVRRSFGIKPLIAAMGSCCLVGVIWKGTLYIANLGDSRAVIGSTGGDSKKIVAEQLTKEHNASREEIRRELRNLHPEDSQIVMMKHGTWRVKGIIQVSRSIGDAYLKRPEFSFDPSFPRFHLPDPIRRAVLSAEPSICSRALQPNDKFVIFASDGLWEHMTNQEAAEIVHKGPRNGSARRLLQAALTEAARKREMRYKDMQKVEKGIRRFFHDDITVVVIFIDHELQKKNVNVPDKSVKGFIDTVGTSRFSSFQEMQ 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07444 388 FunFam Probable protein phosphatase 2C 42 44 361 - -
Vivi1g07444 388 ProSiteProfiles PPM-type phosphatase domain profile. 53 353 IPR001932 -
Vivi1g07444 388 SMART PP2C_4 33 351 IPR001932 -
Vivi1g07444 388 Coils Coil 184 204 - -
Vivi1g07444 388 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169
Vivi1g07444 388 SUPERFAMILY PP2C-like 59 354 IPR036457 -
Vivi1g07444 388 PANTHER PROTEIN PHOSPHATASE 36 351 IPR015655 GO:0004722|GO:0006470
Vivi1g07444 388 CDD PP2Cc 54 353 IPR001932 -
Vivi1g07444 388 Gene3D - 36 364 IPR036457 -
Vivi1g07444 388 Pfam Protein phosphatase 2C 68 321 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07444 Vivi-Chr1 190034558 190037722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07444 1 384 PP2C-type Phosphatase Gene Family AT5G06750 68.031 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07444 K01102 - gmx:100778238 655.21