LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g07432	ATGAACTTCATTTCCTTGCTACTCAAATATCAATTATTAACATTCATTTTCACTATCATAGCCTTAACCAAAGTTAGTTGTTTTTCTTTCAATTTCACAACCTTTGATCCAAATAATTTCTCACCTACCGAAAATTCAAAAGTAACCTCAGATGTCATCCAAATAACCCCAAATAATCATGGTGAAATAGAGAATTATTCAGGACGTGTTTTTTACAAAGAGCCATACCCACTTTTTAACAAGAAAAACAACAAAATAGCTTCTTTCAACACCACTTTTGTTCTTAACATAACTCCTCAAACTTCCCCTGGTGGAGAAGGCATGGCCTTCATCATAGCTTCAGATCAAAATCTCCCCGAAAACAGTCATGGAGAATGGCTTGGTATTGTAAATGCTTCTACAAATGGAACTTCTCGAGCTGAAATTCTTGCAGTAGAGTTCGATACACGACAAAGTTCAACGCAAGACGGTCCTTCCAACCATGTTGGTATCAATATAAATAGCATCTCTTCGTTGAAACTAACATCATTGTCGAACACTAAGGTCAATCTTTCATCTGGAAAAGATGTAACTGTGAGAATTCAATATTCCAATGATATAATATCTGTTTTTGGTTCAATGACTGAAAGTTCACAAGATTCTATGGAGACCCTTTTGGTTTCTCCACCTCTTAATCTATCTTCCTATCTTAAACAAGAGGTTTACCATGTGGGGTTCTCCGCTTCAACGAGCAATTACACAGAGTTAAACACGGTCAAAGCATGGGAATTCAATGGTCTTGATATTTCAGATGGTAAAATAAATCTCTTGTGGGTTTGGATTATAGTTCCATTGGTGATAATCGTAGTTGGATTAGTCTTTTTCTTGGTTTATTTTCAAATGAAAAGAAACATTGAGATTTCAGAAGATGCTTATCCAGAGATAGAGAATCAAATTCAACACTCATCTATGGGTCCGAAGAAATTTGAATTACAGGAATTGATAAAAGCAACCGGTGCATTCAGCCATCACAACAAGCTTGGCCAAGGTGGCTTTGGAACTGTCTATAAGGGTATTCTGGAAAACAACATATACATAGCTGTGAAGAGAGTCTCGAAGAACTCGCGTCAAGGAAAGCAAGAATTTATAGCAGAAGTAACAACAATTGGAAGCCTTCACCATAAGAACTTGGTGAAACTTATTGGTTGGTGCTATGAGAAAAAAGAGCTTCTCCTTGTTTACGAGTTCATGCCGAATGGAAGCTTAGACAAATACCTATTCAACCAATCGGGTGACGAATTTGAATCACATTATTCAAAAGTACTTGATTGGAATACTAGAAATAGTGTGATCCGTGGCGTGGCGCAGGCACTGGATTATCTTCACTATGGTTGCGAAAGAAGAGTACTTCATAGAGACATTAAAGCAAGCAACATAATGCTAGACTTAGATTACAATGCAAAATTGGGTGATTTTGGATTGGCGCGAACAATTCAAAAGAGAAATGAGACTCATCATTCAACAAAGGAAATTGCGGGAACCCCTGGTTATATGGCACCGGAATCTTTTCTAACGGGAAGAGCAACGGTGGAAACGGATGTATACGCATTTGGTGTTTTTGTTTTGGAGGTTGTGTGTGGAAAAAGTCCAGGAAATATGGATGAACAAGATGATTATAAAAATAGTATTGTGTATTGGGTTTGGGAGCATTATGGAAGGGGGAGAATTGTTAGTGTTGTTGATAAAAGGATAAGTGATTGTGAAGAGGATGAGATAGAGATGGTGAAATTTAAGGAAGAAGTTGAAATTGTGCTTATTCTTGGGTTAGCTTGTTGTCATCCAAACCCTAATGAAAGGCCATCAATACAAACAGTTCTGATGGTTCTAACTGGAGAAGCTTCTCCTCCAATTGTTCCAGTGGAAAGACCTTCTTTTGTTTGGCCTGCTATGCCTTCAATTTTCAAAGAAGGGGAAGATAGTTCTCTTATCAATGGAACTGTCTCTCCATTCACTCAACTAAGTGGTAGATAA	2010	0.3751	MNFISLLLKYQLLTFIFTIIALTKVSCFSFNFTTFDPNNFSPTENSKVTSDVIQITPNNHGEIENYSGRVFYKEPYPLFNKKNNKIASFNTTFVLNITPQTSPGGEGMAFIIASDQNLPENSHGEWLGIVNASTNGTSRAEILAVEFDTRQSSTQDGPSNHVGININSISSLKLTSLSNTKVNLSSGKDVTVRIQYSNDIISVFGSMTESSQDSMETLLVSPPLNLSSYLKQEVYHVGFSASTSNYTELNTVKAWEFNGLDISDGKINLLWVWIIVPLVIIVVGLVFFLVYFQMKRNIEISEDAYPEIENQIQHSSMGPKKFELQELIKATGAFSHHNKLGQGGFGTVYKGILENNIYIAVKRVSKNSRQGKQEFIAEVTTIGSLHHKNLVKLIGWCYEKKELLLVYEFMPNGSLDKYLFNQSGDEFESHYSKVLDWNTRNSVIRGVAQALDYLHYGCERRVLHRDIKASNIMLDLDYNAKLGDFGLARTIQKRNETHHSTKEIAGTPGYMAPESFLTGRATVETDVYAFGVFVLEVVCGKSPGNMDEQDDYKNSIVYWVWEHYGRGRIVSVVDKRISDCEEDEIEMVKFKEEVEIVLILGLACCHPNPNERPSIQTVLMVLTGEASPPIVPVERPSFVWPAMPSIFKEGEDSSLINGTVSPFTQLSGR	669

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g07432	669	Gene3D	Phosphorylase Kinase; domain 1	296	409	-	-
	Vivi1g07432	669	SUPERFAMILY	Protein kinase-like (PK-like)	315	622	IPR011009	-
	Vivi1g07432	669	SUPERFAMILY	Concanavalin A-like lectins/glucanases	26	258	IPR013320	-
	Vivi1g07432	669	Gene3D	-	26	265	-	-
	Vivi1g07432	669	ProSitePatterns	Legume lectins beta-chain signature.	143	149	IPR019825	-
	Vivi1g07432	669	ProSitePatterns	Protein kinases ATP-binding region signature.	340	362	IPR017441	GO:0005524
	Vivi1g07432	669	CDD	STKc_IRAK	340	624	-	-
	Vivi1g07432	669	ProSiteProfiles	Protein kinase domain profile.	334	630	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g07432	669	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	462	474	IPR008271	GO:0004672\|GO:0006468
	Vivi1g07432	669	CDD	lectin_legume_LecRK_Arcelin_ConA	28	258	IPR001220	GO:0030246
	Vivi1g07432	669	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	319	409	-	-
	Vivi1g07432	669	Gene3D	Transferase(Phosphotransferase) domain 1	410	627	-	-
	Vivi1g07432	669	SMART	serkin_6	334	630	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g07432	669	Pfam	Protein kinase domain	335	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g07432	669	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	27	266	-	-
	Vivi1g07432	669	Pfam	Legume lectin domain	29	259	IPR001220	GO:0030246
	Vivi1g07432	669	PANTHER	-	47	632	-	-
	Vivi1g07432	669	FunFam	probable L-type lectin-domain containing receptor kinase S.5	410	628	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g07432	Vivi-Chr1	189809035	189812337	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g07432	8	661	Receptor kinase-like Gene Family	AT5G55830	36.402	1.88e-122	377

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vivi1g07432		Pkinase	3.1e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g07432	-		-	tpra:123883598	957.207