LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g07431	ATGAACTTGTTTTTGCTACTCATTTTCAATATCATAGTTTTTACCAAAGTTGGTTGCTTAGATTTCAACTTCTCAACCTTCCAACCAGAAGATGCATCCAATTTGCGTTTAATCGCAAACTCAAGCATATTAAAAGGTGCCATCCAAGTAACCTCAGATGATCGTGGACAACCACTGGCTAATCTTTCCGGACGTGCTTTTTACAACAAGCCATACACACTTTGGAACAAGAAAAACAACAAAACAGCTTCTTTCAACACAACTTTTGTTCTCAACATAACTCCTCAAACTTCCCCCGGTGGAGAAGGCATAGCCTTTATCTTAACTTCAGAACCCTCTCTTCCTGAAAATAGTCATGGACAATGGCTTGGTATTGTTAATGCTTCCACAAATGGAACTTCTCGAGCCCAAATTCTTGCAGTAGAGTTTGATACACGGCAGAATTCGGCACAAGATGGTCCTTCAGACCATGTTGGAATCAACATAAATAGCATCTCTTCGTTGAAACAAAAACCATTACTAAACACTAAGGTCAATCTTTCGTCTGGTCTTAATGTAACTGTGAGAATTCAGTATTCCAATGATATAATATCTGTTTTTGGTTCAATGAATGAAAATTCACAGGATTCTCTGGAGACCCTTTTGGAATCTCCACCTCTTAATCTTTCTTCTTATCTTAGTCAAGAGGTTTACGTCGGTTTTTCTGCTTCAACAAGCAATTACACGGAGCTGAACTGTGTACTAAGATGGGAATTCAATGTAGAAGATATTGATAATGAAAAAAATCTCTGGTGGATTTTTATCATAATTCCAATTGTGATAATCATAGGTGTGCTGGTTTTTATTTTGGCTTATGCTCGAAGAAGAAAAAACATGGAGATTTCAGATGATACAAATCCACATATAGAGGATCAAATTCAACACTCATCTATGGCTCCAAAGAAATATGAATTAAAGGAACTGATAAAAGCAACAGGTGGATTCAGCCTTCAGAACAAGCTGGGCGAAGGTGGATTTGGAACTGTCTATAAGGGTATCCTTGAAAACAACAAAGACATAGCTGTGAAGAGAATCTCAAAGAACTCGCGTCAAGGAAAGCAAGAATTTATAGCAGAAGTAACAACAATTGGAAGTCTTCGCCATAAAAACTTAGTGAAACTCATTGGTTGGTGCTACGAACGGAAAGAACTTCTTCTCGTTTACGAATTCATGCCCCATGGAAGTTTAGACAAATACCTATTTGACCAATCGAGTGATGAATTTGAATTACAATATTCAAAAGTACTTGATTGGAAAACTAGGAATAGCGTGATTCGTGACGTGGCACGAGCACTGGATTATCTTCACAATGGATGTGAAAAAAGAGTGCTTCATAGAGACATTAAAGCAAGCAACATAATGTTGGACTTAGATTACAACGCAAAATTGGGTGATTTTGGATTGGCGCGAACAATTCAAAAGAGAAATGAAACTCATCATTCAACCAAGCAAATTGCAGGAACGCCGGGTTATATTGCACCAGAAACTTTTCTAATGGGAAGAGCGACGGTCGAAACAGATGTGTATGCATTTGGTGTGCTTGTTTTGGAAGTTGTGTGTGGAAAAAGACCTGAAAATGTGTATGCACAAGATGATTATAAAAATAGTATTGTGTATTGGGTTTGGGAGCTTTATGGAAAGGGGAAAAGTGTTAGTGTTGTTGATAAAAGGATATGTGTTGATGAAGAGGATGATATTGAGAGGACAACATTGGAAGAAATTGAAATTGTGCTTATTCTTGGATTGGCTTGTTGTCATCCAAATCCAAATGAAAGGCCATCAATGAAAACTGTTTTGATGGTTCTAAAGGGAGAAGCTTCGCCTCCAACTGTTCCAATGGAAAGACCTGCTTTTGTTTGGCCTGCTATACCTTCATCTTTCAAAGATGGGGAAGATAGTTCTCTTATCAATGGAACTCTCACTCCATTCTCTCAACTTAGTGGAAGATAG	1989	0.3786	MNLFLLLIFNIIVFTKVGCLDFNFSTFQPEDASNLRLIANSSILKGAIQVTSDDRGQPLANLSGRAFYNKPYTLWNKKNNKTASFNTTFVLNITPQTSPGGEGIAFILTSEPSLPENSHGQWLGIVNASTNGTSRAQILAVEFDTRQNSAQDGPSDHVGININSISSLKQKPLLNTKVNLSSGLNVTVRIQYSNDIISVFGSMNENSQDSLETLLESPPLNLSSYLSQEVYVGFSASTSNYTELNCVLRWEFNVEDIDNEKNLWWIFIIIPIVIIIGVLVFILAYARRRKNMEISDDTNPHIEDQIQHSSMAPKKYELKELIKATGGFSLQNKLGEGGFGTVYKGILENNKDIAVKRISKNSRQGKQEFIAEVTTIGSLRHKNLVKLIGWCYERKELLLVYEFMPHGSLDKYLFDQSSDEFELQYSKVLDWKTRNSVIRDVARALDYLHNGCEKRVLHRDIKASNIMLDLDYNAKLGDFGLARTIQKRNETHHSTKQIAGTPGYIAPETFLMGRATVETDVYAFGVLVLEVVCGKRPENVYAQDDYKNSIVYWVWELYGKGKSVSVVDKRICVDEEDDIERTTLEEIEIVLILGLACCHPNPNERPSMKTVLMVLKGEASPPTVPMERPAFVWPAIPSSFKDGEDSSLINGTLTPFSQLSGR	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g07431	662	ProSiteProfiles	Protein kinase domain profile.	328	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g07431	662	Pfam	Protein kinase domain	329	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g07431	662	ProSitePatterns	Legume lectins beta-chain signature.	139	145	IPR019825	-
	Vivi1g07431	662	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	19	261	-	-
	Vivi1g07431	662	FunFam	probable L-type lectin-domain containing receptor kinase S.5	404	621	-	-
	Vivi1g07431	662	SUPERFAMILY	Concanavalin A-like lectins/glucanases	19	266	IPR013320	-
	Vivi1g07431	662	Gene3D	Phosphorylase Kinase; domain 1	289	403	-	-
	Vivi1g07431	662	CDD	lectin_legume_LecRK_Arcelin_ConA	20	254	IPR001220	GO:0030246
	Vivi1g07431	662	Pfam	Legume lectin domain	20	261	IPR001220	GO:0030246
	Vivi1g07431	662	PANTHER	-	48	625	-	-
	Vivi1g07431	662	ProSitePatterns	Protein kinases ATP-binding region signature.	334	356	IPR017441	GO:0005524
	Vivi1g07431	662	SUPERFAMILY	Protein kinase-like (PK-like)	310	615	IPR011009	-
	Vivi1g07431	662	Gene3D	-	19	264	-	-
	Vivi1g07431	662	Gene3D	Transferase(Phosphotransferase) domain 1	404	621	-	-
	Vivi1g07431	662	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	313	403	-	-
	Vivi1g07431	662	CDD	STKc_IRAK	334	617	-	-
	Vivi1g07431	662	SMART	serkin_6	328	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g07431	662	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	456	468	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g07431	Vivi-Chr1	189794398	189796776	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g07431	13	631	Receptor kinase-like Gene Family	AT5G55830	36.006	7.55e-123	378

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vivi1g07431		Pkinase	6.2e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g07431	-		-	tpra:123883598	974.926