Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07417 ATGGAGCTTGCTTTGAGCTTAGGTGACACTCCAAAATTACCCTTTTCTTTCCTTGACAAACCCACCAAAGATCCATTACAACCAAGCTTCTTCTCAAGAAATTCCGAGGAAAAATCGAGCTCCTCAGATCCACCTATTCAACTAGACCTTCTTCCTTTCACTCCTGTTCTTAGATCTCATCATCCTTCTTCTCATCTTCCCATTCCTTGGCTCACTCAACCATGTGGACCGGTGAGGGAGCTAGATGTGAACCGTTTTCCGGCGACAACGGAGGACGTCGACGACGGCGCGTCACTGTCATCACCCAGCAGTTCCGTGTCTCCGTTTCCAATGGATTTCAGTATGAGAAACAACAATGCTGAATATGGAGGAAGAAACAAGAGAGAAAACGAAGGTGAAGCTGAAAGAGCCAGTGATGATGATGAAAATGGGTCAACTCGGAAGAAACTCAGACTCTCTAAAGACCAATCGGCTTTTCTCGAAGAAAGCTTCAAAGAACACACCACCTTAAATCCAAAGCAAAAACTTGCACTGGCAAAACAGTTGAATCTTAGTCCTCGTCAAGTGGAAGTTTGGTTTCAAAACAGAAGAGCAAGAACAAAGTTGAAGCAAACGGAGGTAGATTGTGAGTATTTGAAGAGATGTTGTGAGACATTAACAGAAGAGAATAGAAGGTTACAAAAGGAGCTTCAAGAGCTTAGAGCATTGAAAACTACTCAACCATTCTACATGCAACTTCCAGCTACCACTCTTACTATGTGTCCTTCTTGTGAACGTGTGGCTACAAACCCTTGCAACAATCAATCCAACAACAAGACAAGGGGATTGCCTTTCTCTAATGGACAGGCTCAACAACAGGCCCAAGCCCAAGTCCAAGCCCATCAGATTCCTTCATGA 897 0.4404 MELALSLGDTPKLPFSFLDKPTKDPLQPSFFSRNSEEKSSSSDPPIQLDLLPFTPVLRSHHPSSHLPIPWLTQPCGPVRELDVNRFPATTEDVDDGASLSSPSSSVSPFPMDFSMRNNNAEYGGRNKRENEGEAERASDDDENGSTRKKLRLSKDQSAFLEESFKEHTTLNPKQKLALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTQPFYMQLPATTLTMCPSCERVATNPCNNQSNNKTRGLPFSNGQAQQQAQAQVQAHQIPS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07417 298 MobiDBLite consensus disorder prediction 1 47 - -
Vivi1g07417 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 35 273 - -
Vivi1g07417 298 MobiDBLite consensus disorder prediction 27 47 - -
Vivi1g07417 298 MobiDBLite consensus disorder prediction 268 298 - -
Vivi1g07417 298 SUPERFAMILY Homeodomain-like 140 204 IPR009057 -
Vivi1g07417 298 SMART HOX_1 145 207 IPR001356 GO:0003677
Vivi1g07417 298 FunFam Homeobox-leucine zipper protein 18 133 208 - -
Vivi1g07417 298 Pfam Homeobox associated leucine zipper 203 237 IPR003106 GO:0006355|GO:0043565
Vivi1g07417 298 SMART halz 203 246 IPR003106 GO:0006355|GO:0043565
Vivi1g07417 298 ProSitePatterns 'Homeobox' domain signature. 178 201 IPR017970 GO:0000981|GO:0006355
Vivi1g07417 298 MobiDBLite consensus disorder prediction 122 152 - -
Vivi1g07417 298 Pfam Homeodomain 147 201 IPR001356 GO:0003677
Vivi1g07417 298 ProSiteProfiles 'Homeobox' domain profile. 143 203 IPR001356 GO:0003677
Vivi1g07417 298 Coils Coil 209 239 - -
Vivi1g07417 298 Gene3D - 151 201 - -
Vivi1g07417 298 CDD bZIP 196 235 - -
Vivi1g07417 298 MobiDBLite consensus disorder prediction 94 114 - -
Vivi1g07417 298 CDD homeodomain 147 204 IPR001356 GO:0003677
Vivi1g07417 298 MobiDBLite consensus disorder prediction 90 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07417 Vivi-Chr1 188550490 188552189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07417 45 271 Homeobox Transcription Factor Family AT5G47370 53.750 3.47e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi1g07417 Homeodomain 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07417 K09338 - gmx:100776113 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g07417 1 188550490 188552189 Vivi1g07417 1 188550490 188552189 ECH
Vivi6g04065 6 138207570 138209278 Vivi1g07417 1 188550490 188552189 PCT