Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07416 ATGGCTTTCAACCACTTCTCCTATATCCTTTCCGTGATCTTGTTCTTTGTGTCATTGAGTGTTGCAAATGGTGTTCCACCAGAAGCCATTTGCAACTCTATTGTAAATCCTAGTTATTGTAAAACCGTTATTGGTGATCAAAATGGAAACATCTATGACTACGGTCGCATTTCTATTCAAAAATCGCTATCCCAATCGCGTAAGTTCATGAACTTATTGGACTCGTATCTTCAAGGTGGCTTGTCTATGTCTCAGTCCACAATTCGTGCTCTCGAAGATTGTCGATTCCTTGCAAGCCTAAGTTTCGAATACTTATCAAACACCTATTCCACCACAAATACATATAGTAATATTCTTCCAACTTCTCAAGCAGAAGATTTCGAAACGTTCCTTAGTGCAGTTTTGACTAACCAACAAACATGTTTGGATGGGCTAAACGCTATAGTTTCTTCTGATCAGGGAGTGAAGAACGACTTGTCATTATCACTCTCTAATGAAATAAAGCTTCATAGTGTAACCCTAGCTTTGTTCTTGAAGGGTTGGATGCCTGAGAAAAAAATAAGAACATCATGGCCACAAAATGGTGAACATTTGAATTTCAAAAATGGTCGTTTACCGTTGAAGATGTCAAATAAAGCACGCGCTATTTATGACTCAGCTAGACACCATGGGCGAAAGCTACTTCAAACTGATGAAGATAGTGTTGTGGTAAGTGATATTGTGGTTGTTAGTCAAGATGGAAGTGGAAACTTTAGCACTATCAATGATGCAATTGCAGCTGCACCAAATAACACAGTTGCTAGTGATGGATACTTTCTCATCTTTATCACTGAAGGTGTGTATGAAGAGTATGTATCTATTGACAAAAAGAAGAAGTACTTGATGCTGGTTGGAGAAGGAATCAATAAAACAATTATCACAGGCAATCACAATGTTGTTGATGGTTTCACAACATTCAATTCAGCCACATTTGCTGTGGTAGGTCAGGGGTTTGTGGGAGTTAATATAACATTTCGCAACACGGCTGGACCTGGAAAACATCAAGCAGTTGCAATGAGAAGTGGAGCAGACATGTCAACATTCTACAGTTGCAGCTTTGAAGGGTATCAAGACACACTATATACACATTCTTTGAGGCAATTCTATAGAGAATGTGATATCTATGGAACAGTTGATTTCATATTTGGAAATGCTGCAGTTGTTTTACAAAACTGTAACATATATCCTCGTCTTCCTCTTAATGGACAATTCAATACCATCACAGCGCAAGGTCGAACCGATCCAAATCAAAACACAGGAACTTCTATACAAAATGCAACTATTAAAGCAGCAGATGATTTGGCTCCTAATGTTGGAACAGTTGAAACATATTTAGGGAGACCATGGAAGAATTATTCAAGGACGGTAGTTATGCAATCATCTATGGATAGTTTCATAAATCCTTCTGGTTGGCATATATGGGATGGTGATTTTGCATTGAGTACTTTGTATTATGCAGAATATGATAATAGAGGAGGTGGTTCAAGCACTGCAAATCGAGTCACATGGTCTGGTTATCATGTTATTAATGCTTCGGATGCCGCAAATTTCACAGTCTCTAATTTTGTGAGTGGTGATGATTGGATTCCTCAAACAGGTGTTCCATACTTGAGTGGATTGATATAG 1665 0.3832 MAFNHFSYILSVILFFVSLSVANGVPPEAICNSIVNPSYCKTVIGDQNGNIYDYGRISIQKSLSQSRKFMNLLDSYLQGGLSMSQSTIRALEDCRFLASLSFEYLSNTYSTTNTYSNILPTSQAEDFETFLSAVLTNQQTCLDGLNAIVSSDQGVKNDLSLSLSNEIKLHSVTLALFLKGWMPEKKIRTSWPQNGEHLNFKNGRLPLKMSNKARAIYDSARHHGRKLLQTDEDSVVVSDIVVVSQDGSGNFSTINDAIAAAPNNTVASDGYFLIFITEGVYEEYVSIDKKKKYLMLVGEGINKTIITGNHNVVDGFTTFNSATFAVVGQGFVGVNITFRNTAGPGKHQAVAMRSGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFNTITAQGRTDPNQNTGTSIQNATIKAADDLAPNVGTVETYLGRPWKNYSRTVVMQSSMDSFINPSGWHIWDGDFALSTLYYAEYDNRGGGSSTANRVTWSGYHVINASDAANFTVSNFVSGDDWIPQTGVPYLSGLI 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07416 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 179 IPR035513 -
Vivi1g07416 554 SMART PMEI_2 22 176 IPR006501 GO:0004857
Vivi1g07416 554 FunFam Pectinesterase 28 179 - -
Vivi1g07416 554 FunFam Pectinesterase 234 553 - -
Vivi1g07416 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 177 IPR035513 -
Vivi1g07416 554 CDD PMEI-like_3 29 181 - -
Vivi1g07416 554 Gene3D - 238 554 IPR012334 -
Vivi1g07416 554 PANTHER PECTINESTERASE 18 543 - -
Vivi1g07416 554 Pfam Pectinesterase 241 539 IPR000070 GO:0030599|GO:0042545
Vivi1g07416 554 Pfam Plant invertase/pectin methylesterase inhibitor 28 156 IPR006501 GO:0004857
Vivi1g07416 554 ProSitePatterns Pectinesterase signature 2. 387 396 IPR033131 -
Vivi1g07416 554 SUPERFAMILY Pectin lyase-like 236 552 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07416 Vivi-Chr1 188423046 188424934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07416 14 554 Carbohydrate Esterase AT4G02330 58.887 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07416 K01051 - gmx:100813051 841.647