Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07408 ATGGCTTTCAAGAATTTCTCCTATCTACTTTCCATGTTCTTGATCTTTGTTTCATTGTGTATAGCAAATGCTGTTCCACCAGAAACCATTTGCAACTCTATTGTAAACCCTACTTATTGTAAAACCGTTATCGGTAATCAAAATGGAAACATCTATGACTACGGTCGCATTTCTATTCAAAAATCGTTGTCACAATCTCGTAAGTTCATCAACTTATTGGACTCATATCTTCAAGGTAGCTCGTCTTTGACTCAATCCACAATTCACGCTCTCGAAGATTGTCGATTCCTTGCTAGCCTAAGTTTTGAATACTTATCAAACACCTATGCCACAACAAATACATATAGTAATGTTCTTCCAACTTCTCAAGCAGAAGATTTCGAAACGTTTCTTAGTGCAGTTTTGACTAACCAACAAACATGTTTGGACGGTCTAGACACTATAGTTTCTTCTGATCACAGAGTGAAGAACGACTTATCGTTATCACTCTCTAATGAGAAAAAACTTAATAGTGTAACCCTAGCCTTGTTCTTGAAAGGTTGGATGCCAGAGAAAAAAATAAGAACATCATGGCCACAAAGCGGCAAACACTTGAATTTCAAAAATGGCCGGTTACCATTGAAGATGTCAAATAAAGCACACGCTATTTATGATTCAGCTAGACGCCATGGGCGAAAACTACAGCAAACTCAAACAGATGAAAATAGTGTTGTGGTAAGTGATATTGTGGTTGTTAGTCAAGATGGAAGTGGAAACTTTAGCACTATCAATGAAGCAATTGCTGCTGCACCGAATAACACAGTTGCTAGTGATGGATACTTTCTCATTTTTATCACTGAAGGTGTGTATCAAGAGTATGTATCTATTGACAAAAAGAAGAAGTACTTGATGCTGGTTGGAGAAGGAATCAACAAAACAGTTATCACAGGAAATCACAATGTTGTTGATGGTTTCACAACATTCAATTCTGCCACATTTGCTGTGGTAGGTCAAGGGTTTGTGGGAGTTAATATAACATTTCGCAACACGGCTGGACCAGGAAAACATCAAGCAGTTGCAATGAGAAGTGGGGCTGACATGTCCACATTCTACCGTTGCAGCTTTGAAGGGTATCAAGACACACTATATACACATTCTTTGAGGCAATTCTATAGAGAATGTGATATCTATGGAACAGTTGATTTCATATTTGGAAATGCTGCAGTTGTTTTACAAAACTGTAACATCTATCCTCGTCTTCCTCTTAATGGACAATTCAATACCATCACAGCGCAAGGTCGAACCGATCCAAATCAAAACACAGGAACTTGTATACAAAATGCAACTATTAAAGCAGCAGATGATTTGGCTCCTAATGTTGGAACAGTTGAAACATATTTAGGGAGACCATGGAAGAATTATTCAAGGACGGTAGTTATGCAATCATCTATGGATAGTTTCATAAATCCTTCTGGTTGGCATATATGGGATGGTGATTTTGCATTGAGTACTTTGTATTATGCAGAATATGATAATAGAGGAGGTGGTTCAAGCACTGCAAATCGAGTCACATGGTCTGGTTATCATGTTATTAATGCTTCGGATGCCGCAAATTTCACAGTCTCTAATTTTGTGACTGGTGATGATTGGATTCCTCAAACAGGTGTTCCATACTTGACTGGATTAATATAG 1671 0.3788 MAFKNFSYLLSMFLIFVSLCIANAVPPETICNSIVNPTYCKTVIGNQNGNIYDYGRISIQKSLSQSRKFINLLDSYLQGSSSLTQSTIHALEDCRFLASLSFEYLSNTYATTNTYSNVLPTSQAEDFETFLSAVLTNQQTCLDGLDTIVSSDHRVKNDLSLSLSNEKKLNSVTLALFLKGWMPEKKIRTSWPQSGKHLNFKNGRLPLKMSNKAHAIYDSARRHGRKLQQTQTDENSVVVSDIVVVSQDGSGNFSTINEAIAAAPNNTVASDGYFLIFITEGVYQEYVSIDKKKKYLMLVGEGINKTVITGNHNVVDGFTTFNSATFAVVGQGFVGVNITFRNTAGPGKHQAVAMRSGADMSTFYRCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFNTITAQGRTDPNQNTGTCIQNATIKAADDLAPNVGTVETYLGRPWKNYSRTVVMQSSMDSFINPSGWHIWDGDFALSTLYYAEYDNRGGGSSTANRVTWSGYHVINASDAANFTVSNFVTGDDWIPQTGVPYLTGLI 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07408 556 Gene3D - 237 555 IPR012334 -
Vivi1g07408 556 Pfam Pectinesterase 243 541 IPR000070 GO:0030599|GO:0042545
Vivi1g07408 556 SMART PMEI_2 22 176 IPR006501 GO:0004857
Vivi1g07408 556 Pfam Plant invertase/pectin methylesterase inhibitor 28 175 IPR006501 GO:0004857
Vivi1g07408 556 PANTHER PECTINESTERASE 17 545 - -
Vivi1g07408 556 CDD PMEI-like_3 29 181 - -
Vivi1g07408 556 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 179 IPR035513 -
Vivi1g07408 556 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Vivi1g07408 556 FunFam Pectinesterase 236 555 - -
Vivi1g07408 556 FunFam Pectinesterase 28 179 - -
Vivi1g07408 556 SUPERFAMILY Pectin lyase-like 238 554 IPR011050 -
Vivi1g07408 556 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 177 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07408 Vivi-Chr1 187860370 187862169 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07408 8 556 Carbohydrate Esterase AT4G02330 57.746 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07408 K01051 - gmx:100813051 834.328