Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07397 ATGTTGTGCTGTGGAGGTGCAGAAGAGGATTTTAACGGTTTAGCTGCAAACCATTATAGTGCAGCAGCTATTGGGGCTAACGCATACGGTGCTGGTGGTGGTGGAGGAGGTGGTGATAGAGGAGAGCCAAGGAGCAATATTGTGAAGAGTGGTGGTCCTCAAAAAGCATTAGAAATTGAGATACCTGAATTTAAGTTGAACGAGTTAAAGCGGTTAACAGAGAACTTTGGAACAAAAGCACTCATTGGGGAAGGTTCCTATGGGAGGGTTTTCCGTGCAAAGATGAGCGACGGTGTTGAGGCTGCAATCAAAAAGTTGGATACTAGTTCTACACCGGAAGTTGACTCCGATTTTGAATCACAGTTAGCAATTGTTTCGAGATTGAAGAATGAACATTTTGTCGCGTTGATGGGATATTGTCTCGAGGCGAATAACAGAATTTTGGTTTATGAATATGCAAGTCTTGGTTCTTTGCACGACACATTACACGGAAGGAAAGGAGTTCAAGGGGCAGAACCTGGTCCAGTTTTAAATTGGAACGAGAGAGTAAAAATTGCGTTTGGTGCAGCAAAAGGACTTGAGTTTCTTCATGAGAAAGTTCAACCTTCAATAGTTCATAGAGATGTTAGATCCAGCAATGTCTTGTTATTCAATGATTATGAGGCTAAGGTTGCAGATTTCAACTTGACAAATCAGTCTTCCGACACCGCAGCCCGGCTACATTCAACAAGAGTTTTGGGAACATTTGGCTATCATGCTCCAGAGTATGCCATGACAGGACAAATAACCCAAAAAAGCGATGTATACAGTTTCGGCGTTGTGCTTTTAGAACTCTTGACAGGAAGAAAGCCAGTGGATCATACAATGCCTAAAGGGCAACAAAGTCTTGTAACTTGGGCAACTCCAAGACTAAGTGAAGACAAAGTGAAACAATGTGTCGATCCTAAACTAAACAACGAGTATCCGCCAAAAGCAATCGCTAAGTTGGCAGCAGTTGCAGCACTTTGTGTTCAGTATGAAGCAGATTTCAGGCCAAACATGACAATTGTTGTTAAAGCTCTTCAGCCACTTCTCAATTCGAAACCGGCTGGACCTAACACTAATGCTTGA 1110 0.427 MLCCGGAEEDFNGLAANHYSAAAIGANAYGAGGGGGGGDRGEPRSNIVKSGGPQKALEIEIPEFKLNELKRLTENFGTKALIGEGSYGRVFRAKMSDGVEAAIKKLDTSSTPEVDSDFESQLAIVSRLKNEHFVALMGYCLEANNRILVYEYASLGSLHDTLHGRKGVQGAEPGPVLNWNERVKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKVADFNLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNEYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPAGPNTNA 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07397 369 ProSitePatterns Tyrosine protein kinases specific active-site signature. 204 216 IPR008266 GO:0004672|GO:0006468
Vivi1g07397 369 MobiDBLite consensus disorder prediction 33 52 - -
Vivi1g07397 369 FunFam PTI1-like tyrosine-protein kinase 3 154 363 - -
Vivi1g07397 369 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 3 362 - -
Vivi1g07397 369 SUPERFAMILY Protein kinase-like (PK-like) 57 354 IPR011009 -
Vivi1g07397 369 ProSiteProfiles Protein kinase domain profile. 76 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07397 369 Pfam Protein tyrosine and serine/threonine kinase 80 354 IPR001245 GO:0004672|GO:0006468
Vivi1g07397 369 SMART tyrkin_6 76 354 IPR020635 GO:0004713|GO:0006468
Vivi1g07397 369 Gene3D Phosphorylase Kinase; domain 1 49 152 - -
Vivi1g07397 369 Gene3D Transferase(Phosphotransferase) domain 1 154 365 - -
Vivi1g07397 369 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07397 Vivi-Chr1 187184623 187187497 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07397 40 361 Receptor kinase-like Gene Family AT3G58690 43.558 2.68e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vivi1g07397 PK_Tyr_Ser-Thr 5.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07397 - - gmx:100777194 592.808