Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07387 ATGGCACAGCAGCGCAACAAGCAGCTTCCCTGCGATTCTGTTGGTGTTTGCATGATCTGCAACCAGACGCCTCTAGAAATTGACATTCTTCATTGCAGAACATGTGCAACTCCATGGCATGTTCCATGTTTACCTCTCCTTCCCTTGACAATCTTTGATTGGATATGCATTGATTGTTCTCAACCAGTGGACAACAACCACGTTGCTGATGCACCTGCTACTCCTATCGCTCGTGGTCTTGTCTCTACCATCCATGCCATCGAGAATGATACTTCACTTACCAGTGAAGAAAAGGCTAAAAAACGTCAAGTACTCATTGGTGGATCTTCTAAACAACCTATTGAAAACAACAACAAATCCAATGAGGTGTTTGATGTATTCAATAGCAAGCTTAACTGCTCTATCTGCTTGACCTTGCTTGAGAGACCTATCACTACACCATGCGGGCACAATTTTTGCCTGAAGTGTTTTGAGAAATGGGTTAAGCAAGGAAAACGCAATTGCTCGAATTGTAGGACTGAAATTCCAGCGAAGATGGCGAGTGATCCACAAATCAATGTACAACTGGCGACCACCATTCAAATGGCTAGATCAGAGAGTGTTGCTCATGGGAAGATATTTGTGACGATTCCAAAAGATCATTTTGGACCGATTGTTGCTGAGAATGATCCAACTAGAAAACGGGGGGTTCTTGTTGGTGATACATGGGAGAGTTTGATGGAATGCATGCAATGGGGTGCTCATTTTCCCCACGATGCCAGGACTGCTGGACAGAGTTCTCATGGTGTTCAATCTGTTGCTCTATCTGGTGGTTACATTGACGACATAGATCATGGTAATTGGTTTCTTTATAGTGGAAGTAGTGGAAGAGATCTTAGTGGTAGCAAACGTACCAACAAAAATCAGTTCTTTGATAAAAAATCTGAGAGAAAGAATGAGGCTTTCAGACTCAGTTGCCAAAAAGGTTATCCTATTCGCGTTGTAAGGTCCCACAAAAAGAAACGTTCCTCTTATGCTCCCAAAGCAGGAGTGCGATACGATGGGGTTTATAGAATTGAAAAATGGTGGCGCAAAATTGGAAAACAAGGTCATAAGGTTTGTAGATATCTGTTTGTGAGGTGTGACAATGAGCCTGCTCCATGGACAAGTGATTTATCCGGAGATCGTCTTTGTCCACTACCTATAATTGAGGAGTTGAACGGTGCAGTTGATATTACTGAAAGGAAGGGTGATCCATCATGGGATTTTGATGAGGAAAAAGGATGTTGGCTATGGAAGAAGCCTCCACCACTAAGTAAGAAACCGGTGAACATTGTGGATCCTATTGATGAAACAAAAATAAAATTTGATGTGGAAAAAGCAAGAAGGGTGTCCTTAAAAATCAAGGATAGGCTTTTGAAAGAGCTTGGTTGCACTATCTGCCACAAGGTGTTGGCTTCCCCTCTTACTACACCTTGTGCACACAACTTTTGCAAAGCCTGCTTGGAAGGTGTCTTTTCAGGCCAAAGTTATATAAGGGAGAGGGCATCTCAAAGTGGATTTGCTTTGCGGACAAAGAAAAACATCATGAAATGTCCTACTTGTTCAACTGACATCGTAGATTACCTTCCGATTTTAAAGGTTAACACAGACATGAAGGGCGTCATAGAATCACTCCAGAGAGATTTTTAA 1671 0.4225 MAQQRNKQLPCDSVGVCMICNQTPLEIDILHCRTCATPWHVPCLPLLPLTIFDWICIDCSQPVDNNHVADAPATPIARGLVSTIHAIENDTSLTSEEKAKKRQVLIGGSSKQPIENNNKSNEVFDVFNSKLNCSICLTLLERPITTPCGHNFCLKCFEKWVKQGKRNCSNCRTEIPAKMASDPQINVQLATTIQMARSESVAHGKIFVTIPKDHFGPIVAENDPTRKRGVLVGDTWESLMECMQWGAHFPHDARTAGQSSHGVQSVALSGGYIDDIDHGNWFLYSGSSGRDLSGSKRTNKNQFFDKKSERKNEAFRLSCQKGYPIRVVRSHKKKRSSYAPKAGVRYDGVYRIEKWWRKIGKQGHKVCRYLFVRCDNEPAPWTSDLSGDRLCPLPIIEELNGAVDITERKGDPSWDFDEEKGCWLWKKPPPLSKKPVNIVDPIDETKIKFDVEKARRVSLKIKDRLLKELGCTICHKVLASPLTTPCAHNFCKACLEGVFSGQSYIRERASQSGFALRTKKNIMKCPTCSTDIVDYLPILKVNTDMKGVIESLQRDF 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07387 556 Pfam SAD/SRA domain 228 376 IPR003105 -
Vivi1g07387 556 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 196 391 - -
Vivi1g07387 556 ProSitePatterns Zinc finger RING-type signature. 486 495 IPR017907 -
Vivi1g07387 556 Gene3D - 200 390 IPR036987 -
Vivi1g07387 556 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 71 IPR013083 -
Vivi1g07387 556 ProSiteProfiles Zinc finger RING-type profile. 133 172 IPR001841 -
Vivi1g07387 556 ProSiteProfiles YDG domain profile. 225 373 IPR003105 -
Vivi1g07387 556 SUPERFAMILY FYVE/PHD zinc finger 8 62 IPR011011 -
Vivi1g07387 556 ProSiteProfiles Zinc finger RING-type profile. 471 529 IPR001841 -
Vivi1g07387 556 SMART G9a_1 220 377 IPR003105 -
Vivi1g07387 556 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 199 IPR013083 -
Vivi1g07387 556 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 440 555 IPR013083 -
Vivi1g07387 556 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 200 553 IPR045134 -
Vivi1g07387 556 SUPERFAMILY RING/U-box 125 196 - -
Vivi1g07387 556 SUPERFAMILY PUA domain-like 202 389 IPR015947 -
Vivi1g07387 556 Pfam RING-type zinc-finger 471 506 IPR027370 -
Vivi1g07387 556 Pfam Zinc finger, C3HC4 type (RING finger) 133 171 IPR018957 GO:0046872
Vivi1g07387 556 SMART PHD_3 16 60 IPR001965 -
Vivi1g07387 556 SMART ring_2 471 528 IPR001841 -
Vivi1g07387 556 SMART ring_2 133 171 IPR001841 -
Vivi1g07387 556 ProSitePatterns Zinc finger PHD-type signature. 17 59 IPR019786 -
Vivi1g07387 556 SUPERFAMILY RING/U-box 464 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07387 Vivi-Chr1 186832218 186835892 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07387 8 554 C2H2 Transcription Factor Family AT5G39550 52.862 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07387 K10638 - gmx:100786796 717.227