Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07384 ATGATCTGCAACCAGACGCCTCTAGAAATTGACATTCTTCATTGCAGAACATGTGCAACTCCATGGCATGTTCCATGTTTACCTCTCCTTCCCTTGACAATCTTTGATTGGATATGCATTGATTGTTCTCAACCAGTGGACAACAACCACGTTGCTGATGCACCTGCTACTCCTATCGCTCGTGGTCTTGTCTCTACCATCCATGCCATCGAGAATGATACTTCACTTACCAGTGAAGAAAAGGCTAAAAAACGTCAAGTACTCATTGGTGGATCTTCTAAACAACCTATTGAAAACAACAACAAATCCAATGAGGTGTTTGATGTATTCAATAGCAAGCTTAACTGCTCTATCTGCTTGACCTTGCTTGAGAGACCTATCACTACACCATGCGGGCACAATTTTTGCCTGAAGTGTTTTGAGAAATGGGTTAAGCAAGGAAAACGCAATTGCTCGAATTGTAGGACTGAAATTCCAGCGAAGATGGCGAGTGATCCACAAATCAATGTACAACTGGCGACCACCATTCAAATGGCTAGATCAGAGAGTGTTGCTCATGGGAAGATATTTGTGACGATTCCAAAAGATCATTTTGGACCGATTGTTGCTGAGAATGATCCAACTAGAAAACGGGGGGTTCTTGTTGGTGATACATGGGAGAGTTTGATGGAATGCATGCAATGGGGTGCTCATTTTCCCCACGATGCCAGGACTGCTGGACAGAGTTCTCATGGTGTTCAATCTGTTGCTCTATCTGGTGGTTACATTGACGACATAGATCATGGTAATTGGTTTCTTTATAGTGGAAGTAGTGGAAGAGATCTTAGTGGTAGCAAACGTACCAACAAAAATCAGTTCTTTGATAAAAAATCTGAGAGAAAGAATGAGGCTTTCAGACTCAGTTGCCAAAAAGGTTATCCTATTCGCGTTGTAAGGTCCCACAAAAAGAAACGTTCCTCTTATGCTCCCAAAGCAGGAGTGCGATACGATGGGGTTTATAGAATTGAAAAATGGTGGCGCAAAATTGGAAAACAAGGTCATAAGGTTTGTAGATATCTGTTTGTGAGGTGTGACAATGAGCCTGCTCCATGGACAAGTGATTTATCCGGAGATCGTCTTTGTCCACTACCTATAATTGAGGAGTTGAACGGTGCAGTTGATATTACTGAAAGGAAGGGTGATCCATCATGGGATTTTGATGAGGAAAAAGGATGTTGGCTATGGAAGAAGCCTCCACCACTAAGTAAGAAACCGGTGAACATTGTGGATCCTATTGATGAAACAAAAATAAAATTTGATGTGGAAAAAGCAAGAAGGGTGTCCTTAAAAATCAAGGATAGGCTTTTGAAAGAGCTTGGTTGCACTATCTGCCACAAGGTGTTGGCTTCCCCTCTTACTACACCTTGTGCACACAACTTTTGCAAAGCCTGCTTGGAAGGTGTCTTTTCAGGCCAAAGTTATATAAGGGAGAGGGCATCTCAAAGTGGATTTGCTTTGCGGACAAAGAAAAACATCATGAAATGTCCTACTTGTTCAACTGACATCGTAGATTACCTTCCGATTTTAAAGGTTAACACAGACATGAAGGGCGTCATAGAATCACTCCAGAGAGATTTTTAA 1620 0.4185 MICNQTPLEIDILHCRTCATPWHVPCLPLLPLTIFDWICIDCSQPVDNNHVADAPATPIARGLVSTIHAIENDTSLTSEEKAKKRQVLIGGSSKQPIENNNKSNEVFDVFNSKLNCSICLTLLERPITTPCGHNFCLKCFEKWVKQGKRNCSNCRTEIPAKMASDPQINVQLATTIQMARSESVAHGKIFVTIPKDHFGPIVAENDPTRKRGVLVGDTWESLMECMQWGAHFPHDARTAGQSSHGVQSVALSGGYIDDIDHGNWFLYSGSSGRDLSGSKRTNKNQFFDKKSERKNEAFRLSCQKGYPIRVVRSHKKKRSSYAPKAGVRYDGVYRIEKWWRKIGKQGHKVCRYLFVRCDNEPAPWTSDLSGDRLCPLPIIEELNGAVDITERKGDPSWDFDEEKGCWLWKKPPPLSKKPVNIVDPIDETKIKFDVEKARRVSLKIKDRLLKELGCTICHKVLASPLTTPCAHNFCKACLEGVFSGQSYIRERASQSGFALRTKKNIMKCPTCSTDIVDYLPILKVNTDMKGVIESLQRDF 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07384 539 ProSiteProfiles Zinc finger RING-type profile. 454 512 IPR001841 -
Vivi1g07384 539 SUPERFAMILY PUA domain-like 185 372 IPR015947 -
Vivi1g07384 539 CDD RING-HC_ORTHRUS_rpt1 114 159 IPR047498 -
Vivi1g07384 539 SMART G9a_1 203 360 IPR003105 -
Vivi1g07384 539 ProSitePatterns Zinc finger RING-type signature. 469 478 IPR017907 -
Vivi1g07384 539 SMART ring_2 116 154 IPR001841 -
Vivi1g07384 539 SMART ring_2 454 511 IPR001841 -
Vivi1g07384 539 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 179 374 - -
Vivi1g07384 539 Pfam RING-type zinc-finger 454 489 IPR027370 -
Vivi1g07384 539 ProSiteProfiles YDG domain profile. 208 356 IPR003105 -
Vivi1g07384 539 SUPERFAMILY RING/U-box 108 179 - -
Vivi1g07384 539 Pfam SAD/SRA domain 211 359 IPR003105 -
Vivi1g07384 539 ProSiteProfiles Zinc finger RING-type profile. 116 155 IPR001841 -
Vivi1g07384 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 423 538 IPR013083 -
Vivi1g07384 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 182 IPR013083 -
Vivi1g07384 539 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 183 536 IPR045134 -
Vivi1g07384 539 SUPERFAMILY RING/U-box 447 536 - -
Vivi1g07384 539 Gene3D - 183 373 IPR036987 -
Vivi1g07384 539 Pfam Zinc finger, C3HC4 type (RING finger) 116 154 IPR018957 GO:0046872
Vivi1g07384 539 SUPERFAMILY FYVE/PHD zinc finger 2 44 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07384 Vivi-Chr1 186826425 186835892 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07384 1 537 C2H2 Transcription Factor Family AT5G39550 52.397 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07384 K10638 - gmx:100786796 697.582