Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07378 ATGGATGGTGGTGACGTTATTGGCCATGGAGTAATGCAAGTTAACTCTGAAGCACACGATGGGATTTTTCATGAGAATGGTCGTGTTAACGATGACGGTGAACTGGATTTTGTTAGTGATGGATGCTTGGATAATGTTGAATATGACAACAGAGTTGTTGATGAAGATTCTGAGTTTGAAGAAGTTGAATACTATGATGAAGATGCGGAAGAAGATAATGAATTTTACGGATGTGAATACGATGATGAAGATGGAGATGATGATGGCGAATTAGATGGTGATGATTATGATGACGAGATAGGTTCCGGTTATGTTAGTGGACACGAATATTGGAATACAGATTCAAACGGCAGTGGAATTTCTGGGGAAGGATCGGAATGGGGTTCGGACAGATTGAATGAATCGATATCTTCAGATCAAATTCTAGACGAATCATTTGTTGTTGACGTGTTTGACGACATTGCAAATATGGACATGTTTAACTTGCAATGTGATGATGTTTCGAAGCTGCAATTTGGAAGTCTGGAAATAGCTTACACATGGTACTGTTGGTTTGCAAAGATGAACGGTTTTGCAGTCCGTAAAGGTCAAGTTATTAAAAAAAAGAGTGGAGATGTTACTCAACAAACATTTCTTTGTAACCTTGCAGGATTTAGGCAAAACAAAGTAGATAATCGCAAACGCGGTCTGAGGCACGAAACCTGGTGTGGATGTGAAGCAAAATTTCGGGTTCATATTGATATAATTTCACACCGTTGGTATGTCACAGTTTTTACCTTTGAGCACAATCATGCAATGTTAAAGGAGAAGCACTGCAGGCTGTTGGCAGGTAATAGGAAGCTTAGTAAGTCAGATAAGATGCAAATTAAGAATTTTGGGAATGCCGGAACCAAAGTAACTCAAATGATTGGTTCATTCGCTAATGCTGCCGGGGGGTATGATAAGGTAGGATTTTTGAAGAAGGATGTACATAATCAAATTGCAAGACAAAGGAAAGAGATGTCTTCTGATGCTAAAGGTGCTGTCAGGTATCTTATTGATCTTCGTGTTAAAGATCCATTGATGCTTGTTGCACACACGGTGGGTGCGGATGGAACGTTGCAAAACCTATTTTGGAGCGACGGTGAGAGTCAAAAGAATTATGAACTGTTTGGTGATGTGCTTGCTTTTGATGCTACATACAAGAAAAATAAGTACAGGTGCCCATTTGTTGTTTTTTCTGGTGTTAATCACCATAACCAGAAGATTATATTTGCTACTGCCATAGTTTCAAATGAGATTGAAGGGACATATGTATGGTTGCTGGAGCAGTTTTTGGTTGCAATGAAAGGTAAGACACATTTATCTGTAATAACGGACGGTGATGTTGCTATGAGAAATGCAATCAGGGAAGTCTTTCCCAACAGTTACCACAGGTGTGTGGCATATTTTCGATTTAGAGAGGTTCAAGCTGATTTTGAATCCCAATATGGACAGGCAATGTTGCATACCAATCTTAGGGCGCTTGAGAGGTCAGCATCAAAGCACTGGACAAAAGAGTTATTTGAAATGGTACGATCTGTTATGAAAAAGGTAACCTTAACATCTGTATTAGATATTCAAGATATGACATCAGTTACCAATTATGCAGTGACAAAATACAGAGACGAAGGGCATGGATGGCGTGTTTCCCACTGTCCATCGAATAACGATTTCAGATGCTCGTGTCTTAGAATGGAATCCATTGGGATTCCTTGTGAGCACATTGTTGCTGTGATGGTTTATCTTAATATTGTAGAATTTCCTGAGAATCTTGTATTGAATCGTTGGTCATTATATGCGAAGGAGTCTATTAGTGGAAGTTATGAAGATGGTTCCCACTACTGGGATTCACATTTGGTTGCTAGACACGCTACTTTGGTGAATCTTAGTAAGGAGGTCGCTGACTGTCATATATGGATGCTTAAATCGAAGTACAACAATGAAGATGTTCCAGATAACATACATGTTGAAGAGGAGTTGGTGAATATACTTAACCCTTCATTTTCAAGAAGCAAGGGTTGTGGACCAGGTACTGTTGGTACATCAGAGAGACGCAGGCGGACACAGACGTGTGGGATATGCGGTGCAGCTGGTCACAACAGAAGATGCTGCCCTACTCTTGGAGCAGATGGAGAGCCTCCTGCAGATAGTTCTTTACAATCAGCATCTGTAAGGTTAAGTAATGACTATGGATTTTCAGTTTGA 2226 0.4003 MDGGDVIGHGVMQVNSEAHDGIFHENGRVNDDGELDFVSDGCLDNVEYDNRVVDEDSEFEEVEYYDEDAEEDNEFYGCEYDDEDGDDDGELDGDDYDDEIGSGYVSGHEYWNTDSNGSGISGEGSEWGSDRLNESISSDQILDESFVVDVFDDIANMDMFNLQCDDVSKLQFGSLEIAYTWYCWFAKMNGFAVRKGQVIKKKSGDVTQQTFLCNLAGFRQNKVDNRKRGLRHETWCGCEAKFRVHIDIISHRWYVTVFTFEHNHAMLKEKHCRLLAGNRKLSKSDKMQIKNFGNAGTKVTQMIGSFANAAGGYDKVGFLKKDVHNQIARQRKEMSSDAKGAVRYLIDLRVKDPLMLVAHTVGADGTLQNLFWSDGESQKNYELFGDVLAFDATYKKNKYRCPFVVFSGVNHHNQKIIFATAIVSNEIEGTYVWLLEQFLVAMKGKTHLSVITDGDVAMRNAIREVFPNSYHRCVAYFRFREVQADFESQYGQAMLHTNLRALERSASKHWTKELFEMVRSVMKKVTLTSVLDIQDMTSVTNYAVTKYRDEGHGWRVSHCPSNNDFRCSCLRMESIGIPCEHIVAVMVYLNIVEFPENLVLNRWSLYAKESISGSYEDGSHYWDSHLVARHATLVNLSKEVADCHIWMLKSKYNNEDVPDNIHVEEELVNILNPSFSRSKGCGPGTVGTSERRRRTQTCGICGAAGHNRRCCPTLGADGEPPADSSLQSASVRLSNDYGFSV 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07378 741 ProSiteProfiles Zinc finger SWIM-type profile. 542 590 IPR007527 GO:0008270
Vivi1g07378 741 MobiDBLite consensus disorder prediction 66 93 - -
Vivi1g07378 741 SMART 26again6 565 592 IPR006564 GO:0008270
Vivi1g07378 741 Pfam SWIM zinc finger 566 589 IPR007527 GO:0008270
Vivi1g07378 741 Pfam FAR1 DNA-binding domain 181 267 IPR004330 -
Vivi1g07378 741 PANTHER OS01G0519700 PROTEIN 477 623 - -
Vivi1g07378 741 Pfam MULE transposase domain 387 473 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07378 Vivi-Chr1 186433245 186435931 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi1g07378 MULE 3.9e-22 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07378 - - vvo:131661205 1462.2