Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07366 ATGTCTGCAACTACGAGAACAACTTCATGGGCAGATTCTGCTGAAAATGCGGCCAATGGCTTGTCAGCGCGTCCTGTCAAGCCAGCGTATGTTCCTCCACATCTTCGTAACAGATCAATGGCTCCGGCTGAGCCTCCTTCTATGGGGGGTAATGTTAATGAGAGGGGTTTGGGTAATTGGGGTAGTTCGTCTAACTTCAATAAGCAGGATTTTAGGGCTGGTAGGCAAGGATATGGTTCTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGTTTAACAATAGAGGAGGGGGAGGGGTAGTGAGGGAGCATGGTGGGAGGCGTGAGGCGAATCCTTTTGAGAATGATATTAATGAGTCTTTTAGTGAGCAAGAGAACACGGGAATTAACTTTGATGCTTATGATGATATCCCTGTTGAGACTAGTGGGGAGAATGTTCCGCCTCCTGTGAATACGTTTGCGGAAATAGATTTAGGTGATGCGTTGAATCAGAACATACAGAGATGTAAGTATGTGAAACCAACGCCTGTTCAGAGGTATGCCATACCTATTTCTCTTGCTGGAAGAGATTTGATGGCTTGTGCTCAGACTGGGTCAGGAAAGACAGCTGCATTTTGCTTTCCTATTATAAGTGGAATCCTTAGGGAGCAATATGCTCAAAGACCCCGTGTCGCTCGCACTGCTTATCCTCTCGCACTTATTCTGTCCCCTACCCGGGAGCTCTCTTGTCAGATACATGACGAGGCCAAAAAGTTTTCTTATGAAACTGGTGTCAAGGTTGTAGTTGCTTATGGAGGAGCACCGATCACTCAACAGTTGCGGGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCAACTCCAGGACGACTAGTTGATTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATAAGATATTTGGCTCTTGACGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACACTGCTGTTTAGTGCAACATTTCCCAAAGAGATACAGAGACTTGCGTCAGATTTTCTTGCAAGTTACATATTTCTGGCTGTAGGAAGGGTTGGTTCAAGTACCGATCTAATTTCTCAACGAGTAGAATATGTGCTTGAGTCAGACAAAAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGAGAAAATGATGTGAATGGAAAGCAAGGTCTGACTTTAGTTTTTGTGGAAACAAAGAAAGGAGCTGACGCGTTGGAACACTGCTTGTGTGTTAACGGATTTCCTGCAACTTGCATTCATGGTGACAGAACACAGCAAGAAAGAGAACAAGCATTGAGATCATTCAAGACTGGAAATACTCCAATTCTAGTGGCAACAGATGTTGCAGCACGTGGTCTTGATATTCCACGGGTAGCACATGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACAGGCCGAGCTGGTAAAATGGGATTAGCAACAGCTTTCTTCAATGACAGTAATTTGTCAATGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCTTGGCTCACCCGTTTTGCAGCAAAGACTCCTTATGGTGGCAGTAGAAATAAGCGAAGTGGAGGAGCCCGTTTTGGTGGTCGCGATGTTAGGAAGGAAACCTCATATAATAAAGGAACCGATTACTACGGCGGTGGAGCTGGTGCTGGTTATGGGGTTCCTGCGAGCTATGGTGGAGGGTATGGTCAAGGTGTAACAAGTGCTTGGGATTAG 1830 0.4607 MSATTRTTSWADSAENAANGLSARPVKPAYVPPHLRNRSMAPAEPPSMGGNVNERGLGNWGSSSNFNKQDFRAGRQGYGSGGGGGGGGGGGGGFNNRGGGGVVREHGGRREANPFENDINESFSEQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGDALNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILREQYAQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYETGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLASYIFLAVGRVGSSTDLISQRVEYVLESDKRSHLMDLLHAQRENDVNGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDSNLSMAKPLADLMQEANQEVPAWLTRFAAKTPYGGSRNKRSGGARFGGRDVRKETSYNKGTDYYGGGAGAGYGVPASYGGGYGQGVTSAWD 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07366 609 SMART ultradead3 172 383 IPR014001 -
Vivi1g07366 609 CDD DEADc_DDX3_DDX4 154 374 IPR044763 GO:0003724|GO:0005524
Vivi1g07366 609 MobiDBLite consensus disorder prediction 1 118 - -
Vivi1g07366 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 368 IPR014001 -
Vivi1g07366 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 395 546 IPR001650 -
Vivi1g07366 609 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 123 546 - -
Vivi1g07366 609 MobiDBLite consensus disorder prediction 56 71 - -
Vivi1g07366 609 FunFam ATP-dependent RNA helicase RhlB 371 549 - -
Vivi1g07366 609 Pfam Helicase conserved C-terminal domain 392 507 IPR001650 -
Vivi1g07366 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 524 IPR027417 -
Vivi1g07366 609 CDD SF2_C_DEAD 380 516 - -
Vivi1g07366 609 Gene3D - 371 550 IPR027417 -
Vivi1g07366 609 MobiDBLite consensus disorder prediction 1 16 - -
Vivi1g07366 609 FunFam Probable ATP-dependent RNA helicase DDX4 116 370 - -
Vivi1g07366 609 Pfam DEAD/DEAH box helicase 177 357 IPR011545 GO:0003676|GO:0005524
Vivi1g07366 609 Gene3D - 110 370 IPR027417 -
Vivi1g07366 609 SMART helicmild6 426 507 IPR001650 -
Vivi1g07366 609 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 153 181 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07366 Vivi-Chr1 185921896 185927226 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07366 151 539 Eukaryotic Initiation Factors Gene Family AT3G19760 29.923 4.51e-58 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07366 K11594 - gmx:100818326 916.761