Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07360 ATGGGCTATGATGTTGTGCTTTCCAACCTGCAGAAATTACAAGAACCGCCTATTTTGTTGCTGAGACGCCTGCATATAAGCCATGTTGTCGCATATCTGTCTTTGCATGGAGGTAAAGAGGGTATCCCGCCTCTCCTCTCGAGCCAGATGGTCTCGCCACATCTCCTCCGTCATATTGTACATGGAGCATTAGCAGATGGTGATATTCAATTCTATAGATATTCAGTATGCATAGGTGACAGAATGCAACCGTATGATAATGCCAAACTTGATATTGAATCCATCACTGGAAGGTTACGCGAGAGTGGCGTATTGAACTACGAGGAAGCTAGAGCGCTGTTAGGGAGATATGAGTATCAGAAAGGAAATCTAGTAGCTGCTTTACATGTATTTGAGGGAATAGATATAGCTGTTGTGACTCCGAAGATCAAAATCGCGCTTTCGAGAAATGGAGAACGGCGAAAGAGGCATTCTCATAATCATGGTGAACCGGAAATGTCTATACATTCTGTTGGATTATTGTTGGAAGCACTTTTCCTAAAAACTAAATCTTTGCAGGCTCTTGAGAGGTTTAAAGAAGCTGCTCAATCTTGCAAAGTTATTATGGACATAGTGGAATCTTCATTACCTGAAGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCGTGAGCAAGGCAGTCGAGCTGCTTCCGGAGTTGTGGAAGCTTGCTGATTGTCCGCGCGAAGCTACTTTGTCTTACCGGAGAGCACTCCTTTATCAATGGAATCTTGATGCAGGGACTACAGCTAAGATTCAAAAGGAATTTGTTGTTTTTCTTCTATATAGTGGAGGAGAAGTAATGCCCCCTAATCTGCGTTCCCAAATGGACGGCTCGTTTGTACCAGGAAACAACATAGAAGAGGCCATACTTCTTTTAATGATTTTGCTAAGAAAAGTCTCTCTCAATAGAATTGAGTGGGATCCTTCAATTTTGGACCACCTTTCGTTTGCACTGTCTATTTCGGGAGGCCTATCAAGTTTAGCCGATCATTTGGAAGAATTGCTCCCCGGGACTATTCATCGAAGTGAAAGATTCTATGATCTAGCTCTTTGTTATTATGGGGCAGATAAGGACACAACGGCACTTGATCTACTAGGAAAATTGTTGCATGGTAGAGAAAGGCCAAAACATGTTCCTGGTTTGTTAATGGCTTCTAAGATTTGTTGTGAGAATCCTCCGCTTGCAGAAGAAGGGGTAAGCTTTGCTCAGAGAGCGGTCGAGAGCTTAGATGGAAAATGTACGCAGTTAGAAAATGTTGCCAAATTATATCTTGGTGTTTCATTATCGGCACATTCGAAATTGGCCGTTTCTGATTCTGAGAAGTTTGAGAGGCAATCTGAGGCACTTCAAGCCTTGGAAACTGCTGGTAGAATGACCAGAATGATAGACCCGTTAGTACTATACCATCTTAGCCTAGAATATGCAGAACAAAGGAAGTTGGATGACGCGCTTCATTATGCAAAGTACGTCGTAAAACTGGAAGGTGGTTCTAATGTTAAAGGATGGTTACTATTGGCACGGATATTATCTGCTAAAAAACAGTTCTTGGATGCGGAATCTATTATTAACGCTGCTTTGGATCAGACTGGGAAATGGGATCAAGGTGATTTGTTGCGAACAAAAGCTAAAATTCAAATTGCACAGAACCAGTTAAAGAATGCCATTGAGACATATACTCAGCTTCTTGCAGTTCTTCAAATTCAAAGAAAGAGTTTTGGTTCTTGGAAGAAGTTATATAAGGACAACCGAGATCGTGCTAGGAACTTGGAAGTGGAAATATGGCATGATCTTGCTCATGTATATATCAGTCTGTCCCAATGGCATGATGCAGAGACATGTCTTTCAAAATCTAAGGCCATCAAACCATACTCTGCTTCTAGATGTCATGCTCTAGGTATAATGTATGAAGCAAAGGGCCTTTACAAAGAAGCTCTAAAAGCTTTTGGTGATGCTTTAAACATTGACCCTGGCCATGTTCTGAGCTTAATCTCCACTGCTAAAGTACTTCGACATTGCAGTAATAAATCAAATCCCGCAGTCAGAAGTTTTTTGACGGATGCACTACGACACGATAGATTGAATGCTTCTGCTTGGTATAATCTTGGTCTCTTTCACAAAGCTGAGGGTACAATATCATCATTGGTTGAAGCTGCAGAATGTTTTCAAGCAGCACAGTCTCTTGAAGAATCTGCTCCACTTGAACCTTTCAGATGA 2268 0.4162 MGYDVVLSNLQKLQEPPILLLRRLHISHVVAYLSLHGGKEGIPPLLSSQMVSPHLLRHIVHGALADGDIQFYRYSVCIGDRMQPYDNAKLDIESITGRLRESGVLNYEEARALLGRYEYQKGNLVAALHVFEGIDIAVVTPKIKIALSRNGERRKRHSHNHGEPEMSIHSVGLLLEALFLKTKSLQALERFKEAAQSCKVIMDIVESSLPEGLPDNFGAECKLQETVSKAVELLPELWKLADCPREATLSYRRALLYQWNLDAGTTAKIQKEFVVFLLYSGGEVMPPNLRSQMDGSFVPGNNIEEAILLLMILLRKVSLNRIEWDPSILDHLSFALSISGGLSSLADHLEELLPGTIHRSERFYDLALCYYGADKDTTALDLLGKLLHGRERPKHVPGLLMASKICCENPPLAEEGVSFAQRAVESLDGKCTQLENVAKLYLGVSLSAHSKLAVSDSEKFERQSEALQALETAGRMTRMIDPLVLYHLSLEYAEQRKLDDALHYAKYVVKLEGGSNVKGWLLLARILSAKKQFLDAESIINAALDQTGKWDQGDLLRTKAKIQIAQNQLKNAIETYTQLLAVLQIQRKSFGSWKKLYKDNRDRARNLEVEIWHDLAHVYISLSQWHDAETCLSKSKAIKPYSASRCHALGIMYEAKGLYKEALKAFGDALNIDPGHVLSLISTAKVLRHCSNKSNPAVRSFLTDALRHDRLNASAWYNLGLFHKAEGTISSLVEAAECFQAAQSLEESAPLEPFR 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07360 755 PANTHER PROTEIN NPG1 90 755 IPR043376 -
Vivi1g07360 755 Pfam Tetratricopeptide repeat 490 546 - -
Vivi1g07360 755 SMART tpr_5 713 749 IPR019734 GO:0005515
Vivi1g07360 755 SMART tpr_5 517 550 IPR019734 GO:0005515
Vivi1g07360 755 SMART tpr_5 553 586 IPR019734 GO:0005515
Vivi1g07360 755 SMART tpr_5 643 676 IPR019734 GO:0005515
Vivi1g07360 755 SMART tpr_5 175 208 IPR019734 GO:0005515
Vivi1g07360 755 SMART tpr_5 609 642 IPR019734 GO:0005515
Vivi1g07360 755 SMART tpr_5 482 515 IPR019734 GO:0005515
Vivi1g07360 755 Pfam Tetratricopeptide repeat 644 675 IPR019734 GO:0005515
Vivi1g07360 755 Gene3D Tetratricopeptide repeat domain 85 605 IPR011990 GO:0005515
Vivi1g07360 755 Gene3D Tetratricopeptide repeat domain 606 751 IPR011990 GO:0005515
Vivi1g07360 755 Coils Coil 555 586 - -
Vivi1g07360 755 SUPERFAMILY TPR-like 554 727 IPR011990 GO:0005515
Vivi1g07360 755 SUPERFAMILY TPR-like 462 582 IPR011990 GO:0005515
Vivi1g07360 755 ProSiteProfiles TPR repeat profile. 643 676 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07360 Vivi-Chr1 185662828 185668260 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07360 75 755 Calmodulin-binding Proteins AT4G28600 56.936 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07360 K21843 - gmx:100800762 1075.46