Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07350 ATGGAGAAAGGGAATACAATGGGGATATCTAGGACAATATCAGATCAGCTTGTGGAATCCGTCGCGGCGGCTCTAAAGTCACCGCAGTCGAGCGATCACTCGACTAACTCGGCCTTGGAGGGGAGTGGAGGTCTGTCGAGAAAATCAAGCCGGAGAATAACCTCGGCCTCACCGGGACGTGGCGGAGGGAAGAACACACATATAAGGAAAACAAGAAGCGCTCAAATGAAGATTGATGTTGATGAATTGACTAGTGGCGCAGCTCTGAGCAGAGCTTCAAGCGCTAGCTTGGGTCTCTCGTTTTCTTTCACTGGCTTCAATATGCCTCCAGATCAAATTGCTGATACCAGACCATTTAGTGATGATGACATGATTCCTGAGGATATTGAAGCTGGAATTAGGACAAAGACAAAGTTTCAAACAGAACCTACTCTTCCTATAAATCTAAAGTTCAGTGATGTGACCTACAAGGTAGTGCTGAAAGGCATGACATCAAGTGTGGAGAAAGATATCTTGAATGGGATCAGTGGTTCTGTAAATCCAGGTGAAGTTTTGGCATTGATGGGTCCCTCAGGAAGTGGAAAGACAAGTCTTTTAAATCTCCTTGGAGGAAGGATAAGTCACCCAACAATTGGTGGTTCTATCACTTACAATGAACAATCATACTCCAAGTTCCTTAAGAGCAGGATAGGATTTGTGACACAAGATGATGTTTTGTTTCCTCACCTAACTGTGAAAGAGACGTTAACATACGCAGCGCGGTTACGGCTTCCAAAGACCTTCACTAAAGAGCAAAAGGAAAAAAGAGCTTTAGATGTCATATATGAGCTTGGCTTGGAAAGGTGCCAAGATACCATGATTGGTGGTTCATTTGTTCGCGGAGTGTCGGGTGGAGAGAGGAAGAGAGTTTGTATTGGCAATGAGATCATAATCAACCCTTCCATTTTGTTTCTTGATGAACCAACTTCTGGTTTGGATTCAACAACAGCCTTGAAGATTGTTCAGATGCTGCAAGACATAGCAGAGGCTGGTAAAACAGTAGTGACGACAATTCACCAACCATCAAGTAGACTCTTCCACAAATTTGACAAGTTGATCCTTCTTGGGAAAGGCAGTTTGCTTTACTTTGGAAAAGCATCAGAAGCGATGAATTACTTCCAATCTATAGGATGTTCACCGCTTATTTCCATGAATCCAGCCGAGTTTTTGCTAGACCTTGCGAATGGAAACATAAACGATGTTTCCGTACCATCAGAGTTGGAAGATAAAGTGCAAATCGGAAACGCAGAAGTTGAAAAATATAATGGAAAACCATCACCAGCAGTAGTCCATGAGTATCTAGTGGAGGCATATGAATCTCAAGCTGCGGAAACAAAGAAAAAAACAACGGTTTCTTTACCTCTGGATGAAGCTTTGAAGGCCAAAGCGAGTTCTCCTAAACGGCAATGGGGAGCGAGTTGGGATGAGCAATTTTCCATACTTTTTTGGAGAGGAATCAAAGAAAGGAGGCACGACTATTTTAGCTGGTTGAGAATCACACAAGTTTTATCCACTGCAATCATCTTAGGATTACTCTGGTGGCAATCTGATGTTAAAAACCCAAAAGACCTGCAAGATCAGGCAGGACTGCTTTTCTTTATTGCCGTCTTCTGGGGATTCTTTCCAGTTTTTACAGCAATATTTACATTTCCTCAAGAGAGAGCCATGTTGAATAAGGAACGTGCGGCAGATATGTACAGATTAAGTGCATACTTCCTTGCTAGAACAACAAGCGACCTTCCATTAGACCTGATATTACCGGTGCTTTTTCTCCTTGTTGTTTATTTCATGGCTGGTTTGAGACTAAGTGCTGCTCCGTTTTTCTTCACCATCCTTACTGTTTTCCTCTGCATCATTGCAGCACAGGGTCTTGGACTTGCTATCGGTGCTACGCTTATGGATTTGAAAAGAGCCACGACTTTGGCTTCAGTAACTGTGATGACCTTCATGCTAGCTGGAGGATTTTTCGTCCAGAAAGTCCCGATATTCATCTCTTGGATCCGCTACATGTCTTTCAACTACCACACATACAAACTGTTACTCAAGGTGCAATACGAGCATTTCACACCTATCGTAAATGGAGTAAAAATTGACAGTGGTTTAACAGAAGTAGTTGCTCTGATTGCTATGGTTTTCGGTTACCGTTTATTGGCATATCTTTCATTGCGACGAATGAAACTTCAATAG 2226 0.4268 MEKGNTMGISRTISDQLVESVAAALKSPQSSDHSTNSALEGSGGLSRKSSRRITSASPGRGGGKNTHIRKTRSAQMKIDVDELTSGAALSRASSASLGLSFSFTGFNMPPDQIADTRPFSDDDMIPEDIEAGIRTKTKFQTEPTLPINLKFSDVTYKVVLKGMTSSVEKDILNGISGSVNPGEVLALMGPSGSGKTSLLNLLGGRISHPTIGGSITYNEQSYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTFTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSILFLDEPTSGLDSTTALKIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMNYFQSIGCSPLISMNPAEFLLDLANGNINDVSVPSELEDKVQIGNAEVEKYNGKPSPAVVHEYLVEAYESQAAETKKKTTVSLPLDEALKAKASSPKRQWGASWDEQFSILFWRGIKERRHDYFSWLRITQVLSTAIILGLLWWQSDVKNPKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERAADMYRLSAYFLARTTSDLPLDLILPVLFLLVVYFMAGLRLSAAPFFFTILTVFLCIIAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVQKVPIFISWIRYMSFNYHTYKLLLKVQYEHFTPIVNGVKIDSGLTEVVALIAMVFGYRLLAYLSLRRMKLQ 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07350 741 Pfam ABC-2 type transporter 352 419 IPR043926 GO:0140359
Vivi1g07350 741 Gene3D - 148 389 IPR027417 -
Vivi1g07350 741 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 102 732 - -
Vivi1g07350 741 FunFam ABC transporter G family member 22 159 389 - -
Vivi1g07350 741 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 149 395 IPR003439 GO:0005524
Vivi1g07350 741 SMART AAA_5 181 372 IPR003593 GO:0016887
Vivi1g07350 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 387 IPR027417 -
Vivi1g07350 741 MobiDBLite consensus disorder prediction 24 61 - -
Vivi1g07350 741 Pfam ABC-2 type transporter 489 698 IPR013525 GO:0016020|GO:0140359
Vivi1g07350 741 ProSitePatterns ABC transporters family signature. 295 309 IPR017871 GO:0005524|GO:0016887
Vivi1g07350 741 Pfam ABC transporter 172 323 IPR003439 GO:0005524
Vivi1g07350 741 MobiDBLite consensus disorder prediction 24 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07350 Vivi-Chr1 185186475 185194863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07350 142 409 Calmodulin-binding Proteins AT2G36910 29.078 4.59e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07350 K05681 - gmx:100798801 1228