Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07342 ATGGCACAAGCACAACCCCGCAACCGTAGCAGAAGATGTTGTTGCTGCCTGTTCAGCTTAATTTGGAAGCTCCTCGTAGCAATAGTTTTCATCGTTGCTCTTATATTCCTTGTTTTGTTCCTTATCATCCAACCACGATCCTTCAAATTCAGTGTCAAAGAAGCCAAACTCACCCAATTCAACTACACCACCAACACCAACACCCTCCACTACAACCTCGTACTCAACTTCACGGCACATAACCCAAACAAAAAACTCAACATCTACTACGATGCAATTGAAGGACATGTATCCTACAAAAGAACCAGGTTTGCATCAACGGACGTAATAACGTGGTTAAATTCTTTCCGTCAATACACGAGAAGCTCGAGCCCTATGAGTGGTGTTTATTCTGGGCAACGTGTGATGGCTTTTGACCATGATCAGGTTTCTGATTTTCAACGTGATAAGAACGATGGAGTTTTTCATTTTGATGTGAAATTATACTTTACGATGAGGTTTAGGCTTGGGAATTTTATTTTTCCAGATATTAAGGGCAACATTAAATGTGGGATTGATGTTCCTTTTGCTTCTAATGGGACTAAGCTCATGAATTCATTTGAACCCACCACATGTGAAGTTAATTTTTAA 630 0.4016 MAQAQPRNRSRRCCCCLFSLIWKLLVAIVFIVALIFLVLFLIIQPRSFKFSVKEAKLTQFNYTTNTNTLHYNLVLNFTAHNPNKKLNIYYDAIEGHVSYKRTRFASTDVITWLNSFRQYTRSSSPMSGVYSGQRVMAFDHDQVSDFQRDKNDGVFHFDVKLYFTMRFRLGNFIFPDIKGNIKCGIDVPFASNGTKLMNSFEPTTCEVNF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07342 209 Pfam Late embryogenesis abundant protein 77 178 IPR004864 -
Vivi1g07342 209 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 5 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07342 Vivi-Chr1 185009756 185011750 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07342 42 194 SNARE and Associated Proteins AT1G32270 26.752 2.74e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07342 - - vvo:131641987 355.525