Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07335 ATGGCACCGGTGCAGCCTCACAACCGTTGTAGAAGATGCTGTTGCTGCCTCTTCGGCATAATTTGGAAGCTTCTATTGGCAATAATCATTCTCATTGGTCTCATATTCCTCGTTTTCTCGCTCGTCGTCCAACCGCGAGCCTTCAGATTTAGTGTCAATGAAGCCAAGCTCACCCAATTCAACTACACAACCAAAACCAACACCCTCCATTACAACCTCGTACTCAACTTCACGGCACGTAACCCAAACAAAAAACTCAACTTTTACTACGACGAAGTTGAGGGACACGTGTCCTACCACGGGATAAGATTCGCCTCAACGGACGTTATAACATGGTTAAATTCGTTCCGTCAATACACAAAAAGCACCAACCTTATGAGTGGTGTTTTCTCTGGGCAACGTGTTGTGGTTTTTGATCATGATCAAGTTTCTGATTTTGAACATGACAAGAAAGGAGGAGTTTTTCATATTGATGTGAAATTATACACTAAGATGAGGTTTAGGCTTGGTGATTTTATTTTTGGAGATAATAAGAGTAACATTAAATGTGGGATTGATGTTCCTTTTGGTTCAAATGGGACTAAGCTCTTGAATGCATTTGAACCCACCACATGTGATGTTAATTTTTAA 630 0.4095 MAPVQPHNRCRRCCCCLFGIIWKLLLAIIILIGLIFLVFSLVVQPRAFRFSVNEAKLTQFNYTTKTNTLHYNLVLNFTARNPNKKLNFYYDEVEGHVSYHGIRFASTDVITWLNSFRQYTKSTNLMSGVFSGQRVVVFDHDQVSDFEHDKKGGVFHIDVKLYTKMRFRLGDFIFGDNKSNIKCGIDVPFGSNGTKLLNAFEPTTCDVNF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07335 209 Pfam Late embryogenesis abundant protein 77 183 IPR004864 -
Vivi1g07335 209 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 5 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07335 Vivi-Chr1 184604504 184605552 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07335 42 194 SNARE and Associated Proteins AT1G32270 30.573 9.20e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07335 - - vvo:131641987 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g07335 1 184604504 184605552 Vivi1g07335 1 184604504 184605552 ECH
Vivi6g05651 6 162770897 162771881 Vivi1g07335 1 184604504 184605552 PCT