Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07319 ATGTCCGGTGGCGCTGGAGCTTCTGACCGTGGCTCGCCGATGCCGAGGGAGGCTAACGGAGCACCGAGTAGGCCGCCGTTGAAGCGTCATCTGGCGTTTGTCTCGACGAAGCCGCCATTTGCACCGATGGATGAGTATCACAGTTTTGCCGCCGTTGATTCTCGGAAAGTCGCCGATCACGTGACTGAAGCGGTTGTTATCAGATCTCCGGTCATAAAGCGGAAGAATGGAATGAATGAAAGTGAAGGAGAATCACAAAAGTGGACTAACAGCCCTGGATACACCCATGTAACCAGTAGTAGCCCCTTTAAAACTCCATTGTCTGCAAAAGATGGAAGGACAAACAAGTCAAGGGTTTCCAAAGAAGGCAGATCATGTCCTCCAACACCTATCTCAAATGCTGGTTCCCCTTCCCCTCTTACTCCTGCTGGTAGCTGTCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGATCAAGCGTGCTGAGGATGGAATTCTTGACCTGAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACTAATGTGTTGGAAGGCATTGGTCTCATTGAAAAGAATCTCAAGAACAGAATACATTGGAAAGGAATTGAATCTTCTGCGCCTGGTAGTATGGATGGGGATATCTCTATGCTTAAGTCAGAAGTTGAGAAACTTTCTTTGGAAGAACAGAGTCTAGATGATCAAATAAGGGAGATGCAAGAAAGGCTGAGAAGTTTGAGTGAAGATGAAAATAACCAGAAGTTCCTTTTTGTGACCGAGGAAGATATTAAGGGCCTACCTTGCTTCCAGCAGAATGAAACTTTGATAGCAATCAAAGCTCCACATGGAACCACCTTGGAAGTCCCTGATCCTGAGGAAGCCGTTGACTATCTACAGAGGAGATATAGAATCATTCTTAGGAGCACAATGGGTCCCATCGATGTCTACCTTATCAGTCAATTTGAGGAGAAATTTGAAGAGATTAATGGTGCTGAGCCCCCCGTGAGCTTACCTCTTGCTTCAAGTTCAGGGTCTAATGAGCAACAAGTGACGGAAATGGTTCCTGCTGAATGCAGTGGTAACGGACTTGAACCTCAAGCTCTTCTCTCTTCCCAGACATACTCTGAACTAAATGTTTCCCAAGAGCTTGCTGGGGGTATGATGAAGATTGTCCCTTCAGATGCTGATAATGATGCTGATTATTGGCTTCTATCAGATGCTGAAGTTAGCATAACAGATATGTGGAGAACAGATTCTAATGTTGATTGGAGTGGAGTGGACATGCTTCATCCTGACTTTGAAATGATCTCGAGGCCACAAACTCCATCACCTGGACTTGTAGAAGCACCACCGACTGTAGCAAACCCTAATCAGAGGTGA 1410 0.4532 MSGGAGASDRGSPMPREANGAPSRPPLKRHLAFVSTKPPFAPMDEYHSFAAVDSRKVADHVTEAVVIRSPVIKRKNGMNESEGESQKWTNSPGYTHVTSSSPFKTPLSAKDGRTNKSRVSKEGRSCPPTPISNAGSPSPLTPAGSCRYDSSLGLLTKKFINLIKRAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKNLKNRIHWKGIESSAPGSMDGDISMLKSEVEKLSLEEQSLDDQIREMQERLRSLSEDENNQKFLFVTEEDIKGLPCFQQNETLIAIKAPHGTTLEVPDPEEAVDYLQRRYRIILRSTMGPIDVYLISQFEEKFEEINGAEPPVSLPLASSSGSNEQQVTEMVPAECSGNGLEPQALLSSQTYSELNVSQELAGGMMKIVPSDADNDADYWLLSDAEVSITDMWRTDSNVDWSGVDMLHPDFEMISRPQTPSPGLVEAPPTVANPNQR 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07319 469 SUPERFAMILY E2F-DP heterodimerization region 225 330 IPR037241 -
Vivi1g07319 469 Coils Coil 225 259 - -
Vivi1g07319 469 Pfam E2F transcription factor CC-MB domain 228 329 IPR032198 GO:0046983
Vivi1g07319 469 SUPERFAMILY "Winged helix" DNA-binding domain 147 210 IPR036390 -
Vivi1g07319 469 Gene3D - 141 214 IPR036388 -
Vivi1g07319 469 MobiDBLite consensus disorder prediction 126 142 - -
Vivi1g07319 469 PANTHER TRANSCRIPTION FACTOR E2F 79 431 IPR015633 GO:0000978|GO:0006357
Vivi1g07319 469 MobiDBLite consensus disorder prediction 82 113 - -
Vivi1g07319 469 Coils Coil 163 183 - -
Vivi1g07319 469 MobiDBLite consensus disorder prediction 76 142 - -
Vivi1g07319 469 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
Vivi1g07319 469 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
Vivi1g07319 469 Gene3D - 220 330 - -
Vivi1g07319 469 FunFam E2F transcription factor 1 141 214 - -
Vivi1g07319 469 CDD E2F_DD 228 330 IPR032198 GO:0046983
Vivi1g07319 469 MobiDBLite consensus disorder prediction 1 30 - -
Vivi1g07319 469 MobiDBLite consensus disorder prediction 447 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07319 Vivi-Chr1 183646722 183653191 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07319 22 469 E2F-DP Transcription Factor Family AT2G36010 56.448 1.11e-167 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vivi1g07319 E2F_CC-MB 3.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07319 K06620 - gmx:100811762 736.102