Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07239 ATGTATGATCCTCCCAATTTAATCCACATACTCATTCCAATAGAGCAATTTTTAAACCACAAGATTCTCATTCCCATTCCAATTTCCATTTCCTCATCAACAAACATAATGCCAATTTCATATTCTTATTCATATTCACATTCACATTCACTCTCATCATCATTCATTCATCCAAAGCTAAACCCAAACCTCCGTCCAATCCAAACCCAATCCCCAACCCAAAATAACCGCCAATTCCCGAACCTGAAACTCCAAAGCTCCCTCCGAACCAACCACACAATCCACTTCCTAAAACCGCATCTAATCTCCCAACACAAACCAATCCTCTACGGCTGGCTCTGCAGCGCTATCTCCGTCTACTCCCTCTCCAACCTCCTCTCAAAATTCTCCGCCATCACCACCGCCACAACCGCCGTCGATGTCACACAGGGACTCGCGCTCGGCGGTTTGGTTCTTGTTCGGTTGATTGCCACGTACGCGCAGCATGCGCTTCTTTGGGAAGCTTCGCTTAATGCGGTTTACGATGTTCGCGTTCACGTTTTCGATCGTGTGCTTCAGAGGGAGCTTGGATTTTTTGAAGCTAACGACGCCGTTTCGAGTGGGGATGTTGCGTATAGGATTACTGCTGAAGCTTCCGATCTTGGCCTCACGTTATACGCTCTTCTTAATACCATAGTACCTAGTTCTCTGCAATTGTCTGCAATGATAATGCATATGTTGGCTATAAGTCCTGTCCTTTCTTTGATTTCAGCCATGGTTATTCCTTGTATGGTTCTAGTTGTTGCCTTTCTTGGTCAAGAACTTCGCAAGATATCTAAGAAGTCACATCTTAGCGTTGCTGCTCTCTCAGCATATCTAAATGAGATGCTGCCCGCGATTCTCTTTGTGAAAGCAAACAATGCAGAGTTGCTTGAGAGTGCCAGGTTTAGGAGACTGGCCCTGGCGGACAGTTCTGCAAAGCTGAACAAAAAAAGGATGAAAGCAGTCATTCCCCAGGTTATACAGGCTATTTACTTTGGAGTTCTTTCCATACTTTGCGCAGGTTCGGTGGTTATTTCAAAAGGTTCATTTGATCGCCGTAGCTTGGTTTCATTCGTGACTTCATTGCTTTTCTTGATCGAGCCTATTCAGGATGTAGGAAAAGCTTACAATGAATGGAGGCAGGGAGAACCAGCTATTGAACGCCTGTTTGCTATGACCAAGTTCAAAAATAAGGTAGTTGAGAAACCAGATGCTGTTGATTTGGACCATGTTACAGGGGACCTGAAATTTTGTGATGTATCCTTTAAGTATAATGATGGCTTGCCCGTAATCTTAAATGGATTGAATCTTCACGTTCGGACAGGAGAAATAGTTGCTATCGTAGGTCCGTCGGGGGGAGGGAAAACAACACTCGCGAAACTGTTGCTTCGGCTTTATGATCCTATATCTGGTTCTATACTGATTGATAACCAAAACATCCAAGACATTCGTTTGCGGAGTTTAAGAAAACACGTCGGTGTAGTTTCTCAAGATATAACACTTTTTTCAGGTACAGTTGCTGAAAACATTGGTTATAGGGACCTGACAACAAAAATCGACATGGAGAGAGTAAAACGGGTAGCTCAAACTGCTTATGCAGATGAGTTTATTAGAAAACTTCCAGAAGGTTACAAAACCAATATTGGACCAAGGGGCTCAACTTTAAGTGGAGGCCAAAGGCAAAGGTTGGCTATTGCAAGGGCTTTCTATCAAAACTCTTCTATTTTGATTCTCGATGAGGCAACTTCTGCCTTAGATAGTAAGTCTGAGTTATTAGTGAGGCAAGCTGTGGAGCGTTTAATGGAGAATCGCACGGTGCTTGTGATTTCGCATCGCTTGGAAACTGTTATGATGGCGAAACGAATATTCCTTTTGGATAATGAAAAGCTAGAAGAGCTGCCTCGATCAACTATGTTGAACGGTCATATGGATTCATTGCTATCATCTGGGCGTATTATTTGA 1983 0.4332 MYDPPNLIHILIPIEQFLNHKILIPIPISISSSTNIMPISYSYSYSHSHSLSSSFIHPKLNPNLRPIQTQSPTQNNRQFPNLKLQSSLRTNHTIHFLKPHLISQHKPILYGWLCSAISVYSLSNLLSKFSAITTATTAVDVTQGLALGGLVLVRLIATYAQHALLWEASLNAVYDVRVHVFDRVLQRELGFFEANDAVSSGDVAYRITAEASDLGLTLYALLNTIVPSSLQLSAMIMHMLAISPVLSLISAMVIPCMVLVVAFLGQELRKISKKSHLSVAALSAYLNEMLPAILFVKANNAELLESARFRRLALADSSAKLNKKRMKAVIPQVIQAIYFGVLSILCAGSVVISKGSFDRRSLVSFVTSLLFLIEPIQDVGKAYNEWRQGEPAIERLFAMTKFKNKVVEKPDAVDLDHVTGDLKFCDVSFKYNDGLPVILNGLNLHVRTGEIVAIVGPSGGGKTTLAKLLLRLYDPISGSILIDNQNIQDIRLRSLRKHVGVVSQDITLFSGTVAENIGYRDLTTKIDMERVKRVAQTAYADEFIRKLPEGYKTNIGPRGSTLSGGQRQRLAIARAFYQNSSILILDEATSALDSKSELLVRQAVERLMENRTVLVISHRLETVMMAKRIFLLDNEKLEELPRSTMLNGHMDSLLSSGRII 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07239 660 FunFam ABC transporter related 95 402 - -
Vivi1g07239 660 Gene3D - 411 657 IPR027417 -
Vivi1g07239 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 639 IPR027417 -
Vivi1g07239 660 FunFam ABC transporter ATP-binding protein 415 656 - -
Vivi1g07239 660 CDD ABC_6TM_exporters 144 396 - -
Vivi1g07239 660 Pfam ABC transporter 439 590 IPR003439 GO:0005524
Vivi1g07239 660 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 422 659 IPR003439 GO:0005524
Vivi1g07239 660 Pfam ABC transporter transmembrane region 121 375 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g07239 660 Gene3D ABC transporter type 1, transmembrane domain 103 401 IPR036640 GO:0005524|GO:0016020
Vivi1g07239 660 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 130 639 IPR039421 -
Vivi1g07239 660 ProSitePatterns ABC transporters family signature. 562 576 IPR017871 GO:0005524|GO:0016887
Vivi1g07239 660 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 113 388 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g07239 660 SMART AAA_5 448 636 IPR003593 GO:0016887
Vivi1g07239 660 SUPERFAMILY ABC transporter transmembrane region 111 400 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07239 Vivi-Chr1 179105284 179111120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07239 412 658 Calmodulin-binding Proteins AT2G36910 44.800 1.76e-54 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07239 K02021 - gmx:100788075 867.455