Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07210 ATGGAGGAAGAAAAATTCATTGAGCTCAAAACTGTTACCACAAAGTTTGTGAATTCTTCTCCTACACCAAAAATTGTTAGAATCTCATATACTGATGAATATGCAACAGATTCTTCATCTGAAGAAGAACAACAAGAACATAGCTTTGTTCAACGTGTAACAACAAAGAAAATGGTGAAAGAGATTAGATTCCAAACATGTTCCACTCAATCCAACAAGAGAGTCAGTATGAAGAAACATGAAGATGGAGAAAACTACAATGTGGATGGTGAATGTGGTTTGAAACAAGTTCATCAAAAGTTCCGTGGTGTCCGAAGGCGGCAATGGGGGAGATGGGCGGCGGAGATTCGCGATCCTCGGCTCGGAAGGAGAAGATGGTTAGGAACTTATGATACGGCTGAAGAAGCTGCTTTGGTTTATGATAGAGCTGCAATTGAGTATAGAGGTGCTGATGCTGTTACAAATATTATGGAACCGCCGAAAAAACATCATCAACAACAACAAAAGAAAACATCGAATAATGTACGTGACCAAAATGTTAACGTCAATGTTCTTGGTGATTACGATTCTGTTGATAAGGATTGTAATAATGGTAGTTCATCTTCTTCATCTGTTACTGAAATTTGGAGCGAAAGAATAAGTGTGCAAGAATGGATTAGAGAGTTAACTGGAGAAGAATACTTAGATGAGTCCTTTTGGTTCTCTTTGTTCCTATGA 717 0.3821 MEEEKFIELKTVTTKFVNSSPTPKIVRISYTDEYATDSSSEEEQQEHSFVQRVTTKKMVKEIRFQTCSTQSNKRVSMKKHEDGENYNVDGECGLKQVHQKFRGVRRRQWGRWAAEIRDPRLGRRRWLGTYDTAEEAALVYDRAAIEYRGADAVTNIMEPPKKHHQQQQKKTSNNVRDQNVNVNVLGDYDSVDKDCNNGSSSSSSVTEIWSERISVQEWIRELTGEEYLDESFWFSLFL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07210 238 SMART rav1_2 100 163 IPR001471 GO:0003700|GO:0006355
Vivi1g07210 238 CDD AP2 99 155 IPR001471 GO:0003700|GO:0006355
Vivi1g07210 238 Gene3D AP2/ERF domain 99 157 IPR036955 GO:0003700|GO:0006355
Vivi1g07210 238 MobiDBLite consensus disorder prediction 158 178 - -
Vivi1g07210 238 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Vivi1g07210 238 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Vivi1g07210 238 ProSiteProfiles AP2/ERF domain profile. 100 157 IPR001471 GO:0003700|GO:0006355
Vivi1g07210 238 Pfam AP2 domain 100 149 IPR001471 GO:0003700|GO:0006355
Vivi1g07210 238 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 211 - -
Vivi1g07210 238 SUPERFAMILY DNA-binding domain 100 156 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07210 Vivi-Chr1 177615375 177616091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07210 5 173 AP2-EREBP Transcription Factor Family AT4G27950 44.565 1.40e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g07210 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07210 - - vvo:131660139 461.07